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This page was generated on 2024-11-02 12:07 -0400 (Sat, 02 Nov 2024).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.1 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4500
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4763
palomino8Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4505
lconwaymacOS 12.7.1 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4538
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.4.1 (2024-06-14) -- "Race for Your Life" 4493
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2088/2289HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
supraHex 1.44.0  (landing page)
Hai Fang
Snapshot Date: 2024-11-01 13:40 -0400 (Fri, 01 Nov 2024)
git_url: https://git.bioconductor.org/packages/supraHex
git_branch: RELEASE_3_20
git_last_commit: fa3ac85
git_last_commit_date: 2024-10-29 09:47:31 -0400 (Tue, 29 Oct 2024)
teran2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped
palomino8Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    OK  

BUILD results for supraHex on lconway

To the developers/maintainers of the supraHex package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/supraHex.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: supraHex
Version: 1.44.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data supraHex
StartedAt: 2024-11-01 18:38:41 -0400 (Fri, 01 Nov 2024)
EndedAt: 2024-11-01 18:38:56 -0400 (Fri, 01 Nov 2024)
EllapsedTime: 14.9 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data supraHex
###
##############################################################################
##############################################################################


* checking for file ‘supraHex/DESCRIPTION’ ... OK
* preparing ‘supraHex’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘supraHex_vignettes.Rnw’ using Sweave
Loading required package: hexbin
Start at 2024-11-01 18:38:53.428638

First, define topology of a map grid (2024-11-01 18:38:53.431397)...
Second, initialise the codebook matrix (169 X 6) using 'linear' initialisation, given a topology and input data (2024-11-01 18:38:53.431397)...
Third, get training at the rough stage (2024-11-01 18:38:53.446308)...
	1 out of 2 (2024-11-01 18:38:53.448833)
	updated (2024-11-01 18:38:53.473149)
	2 out of 2 (2024-11-01 18:38:53.47377)
	updated (2024-11-01 18:38:53.499432)
Fourth, get training at the finetune stage (2024-11-01 18:38:53.499865)...
	1 out of 7 (2024-11-01 18:38:53.50105)
	updated (2024-11-01 18:38:53.535545)
	2 out of 7 (2024-11-01 18:38:53.536066)
	updated (2024-11-01 18:38:53.563117)
	3 out of 7 (2024-11-01 18:38:53.563688)
	updated (2024-11-01 18:38:53.588918)
	4 out of 7 (2024-11-01 18:38:53.589383)
	updated (2024-11-01 18:38:53.614479)
	5 out of 7 (2024-11-01 18:38:53.614897)
	updated (2024-11-01 18:38:53.653088)
	6 out of 7 (2024-11-01 18:38:53.653695)
	updated (2024-11-01 18:38:53.682773)
	7 out of 7 (2024-11-01 18:38:53.683333)
	updated (2024-11-01 18:38:53.707379)
Next, identify the best-matching hexagon/rectangle for the input data (2024-11-01 18:38:53.707854)...
Finally, append the response data (hits and mqe) into the sMap object (2024-11-01 18:38:53.745179)...

Below are the summaries of the training results:
   dimension of input data: 1000x6
   xy-dimension of map grid: xdim=15, ydim=15, r=8
   grid lattice: hexa
   grid shape: suprahex
   dimension of grid coord: 169x2
   initialisation method: linear
   dimension of codebook matrix: 169x6
   mean quantization error: 1.95983722973839

Below are the details of trainology:
   training algorithm: batch
   alpha type: invert
   training neighborhood kernel: gaussian
   trainlength (x input data length): 2 at rough stage; 7 at finetune stage
   radius (at rough stage): from 4 to 1
   radius (at finetune stage): from 1 to 1

End at 2024-11-01 18:38:54.181447
Runtime in total is: 1 secs

Warning: The `path` argument of `write_delim()` is deprecated as of readr 1.4.0.
ℹ Please use the `file` argument instead.
ℹ The deprecated feature was likely used in the supraHex package.
  Please report the issue to the authors.

Error: processing vignette 'supraHex_vignettes.Rnw' failed with diagnostics:
 chunk 18 
Error in igraph::as_data_frame(., what = "edge") : 
  `arg` must be one of "edges", "vertices", or "both", not "edge".
ℹ Did you mean "edges"?

--- failed re-building ‘supraHex_vignettes.Rnw’

SUMMARY: processing the following file failed:
  ‘supraHex_vignettes.Rnw’

Error: Vignette re-building failed.
Execution halted