Back to Multiple platform build/check report for BioC 3.20:   simplified   long
ABCDEFGHIJKLMNOPQR[S]TUVWXYZ

This page was generated on 2024-07-06 11:45 -0400 (Sat, 06 Jul 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4643
palomino6Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4414
lconwaymacOS 12.7.1 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4442
kjohnson3macOS 13.6.5 Venturaarm644.4.1 (2024-06-14) -- "Race for Your Life" 4391
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.4.1 (2024-06-14) -- "Race for Your Life" 3833
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1820/2243HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
scAnnotatR 1.11.0  (landing page)
Johannes Griss
Snapshot Date: 2024-07-05 14:00 -0400 (Fri, 05 Jul 2024)
git_url: https://git.bioconductor.org/packages/scAnnotatR
git_branch: devel
git_last_commit: 77000fc
git_last_commit_date: 2024-04-30 11:36:58 -0400 (Tue, 30 Apr 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino6Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.6.5 Ventura / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  NA    ERROR  skipped

BUILD results for scAnnotatR on kunpeng2

To the developers/maintainers of the scAnnotatR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/scAnnotatR.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: scAnnotatR
Version: 1.11.0
Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data scAnnotatR
StartedAt: 2024-07-06 01:34:51 -0000 (Sat, 06 Jul 2024)
EndedAt: 2024-07-06 01:38:31 -0000 (Sat, 06 Jul 2024)
EllapsedTime: 219.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data scAnnotatR
###
##############################################################################
##############################################################################


* checking for file ‘scAnnotatR/DESCRIPTION’ ... OK
* preparing ‘scAnnotatR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘classifying-cells.Rmd’ using rmarkdown

Quitting from lines 75-76 [unnamed-chunk-4] (classifying-cells.Rmd)
Error: processing vignette 'classifying-cells.Rmd' failed with diagnostics:
GRanges objects don't support [[, as.list(), lapply(), or unlist() at
  the moment
--- failed re-building ‘classifying-cells.Rmd’

--- re-building ‘training-basic-model.Rmd’ using rmarkdown
--- finished re-building ‘training-basic-model.Rmd’

--- re-building ‘training-child-model.Rmd’ using rmarkdown

Quitting from lines 63-66 [unnamed-chunk-3] (training-child-model.Rmd)
Error: processing vignette 'training-child-model.Rmd' failed with diagnostics:
GRanges objects don't support [[, as.list(), lapply(), or unlist() at
  the moment
--- failed re-building ‘training-child-model.Rmd’

SUMMARY: processing the following files failed:
  ‘classifying-cells.Rmd’ ‘training-child-model.Rmd’

Error: Vignette re-building failed.
Execution halted