Mike Smith
| Snapshot Date: 2024-10-02 13:40 -0400 (Wed, 02 Oct 2024) |
| git_url: https://git.bioconductor.org/packages/rhdf5 |
| git_branch: devel |
| git_last_commit: cb3b4a4 |
| git_last_commit_date: 2024-04-30 10:26:43 -0400 (Tue, 30 Apr 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-10-03 11:42 -0400 (Thu, 03 Oct 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| teran2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4461 |
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4716 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4466 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4498 |
| kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4446 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4445 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1725/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| rhdf5 2.49.0 (landing page) Mike Smith
| teran2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | ERROR | skipped | ||||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | WARNINGS | OK | | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | WARNINGS | ||||||||||
|
To the developers/maintainers of the rhdf5 package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/rhdf5.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: rhdf5 |
| Version: 2.49.0 |
| Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 rhdf5 |
| StartedAt: 2024-10-02 18:50:28 -0400 (Wed, 02 Oct 2024) |
| EndedAt: 2024-10-02 18:52:42 -0400 (Wed, 02 Oct 2024) |
| EllapsedTime: 134.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 rhdf5
###
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* checking for file ‘rhdf5/DESCRIPTION’ ... OK
* preparing ‘rhdf5’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘practical_tips.Rmd’ using rmarkdown
Warning in file(con, "w") :
cannot open file 'practical_tips.knit.md': No space left on device
Error: processing vignette 'practical_tips.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘practical_tips.Rmd’
--- re-building ‘rhdf5.Rmd’ using rmarkdown
Warning in file("", "w+b") :
cannot open file '/tmp/RtmpHCWG8y/Rf1595136cda1bc5': No space left on device
Warning in file(con, "w") :
cannot open file 'rhdf5.knit.md': No space left on device
Error: processing vignette 'rhdf5.Rmd' failed with diagnostics:
cannot open the connection
Warning in file(con, "w") :
cannot open file 'rhdf5.R': No space left on device
Error: tangling vignette 'rhdf5.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘rhdf5.Rmd’
--- re-building ‘rhdf5_cloud_reading.Rmd’ using rmarkdown
--- finished re-building ‘rhdf5_cloud_reading.Rmd’
SUMMARY: processing the following files failed:
‘practical_tips.Rmd’ ‘rhdf5.Rmd’ ‘rhdf5.Rmd’
Error: Vignette re-building failed.
Execution halted