Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-08-21 11:41 -0400 (Wed, 21 Aug 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4703 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4440 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4472 |
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4421 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4414 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1714/2255 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
rgoslin 1.9.0 (landing page) Nils Hoffmann
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ![]() | ||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK | ![]() | ||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the rgoslin package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/rgoslin.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: rgoslin |
Version: 1.9.0 |
Command: F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL rgoslin |
StartedAt: 2024-08-20 16:47:08 -0400 (Tue, 20 Aug 2024) |
EndedAt: 2024-08-20 16:49:25 -0400 (Tue, 20 Aug 2024) |
EllapsedTime: 137.1 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL rgoslin ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.20-bioc/R/library' * installing *source* package 'rgoslin' ... ** using staged installation ** libs using C++ compiler: 'G__~1.EXE (GCC) 13.2.0' using C++11 The name of the shared library to be created is: rgoslin.dll make[1]: Entering directory '/f/biocbuild/bbs-3.20-bioc/meat/rgoslin/src/cppgoslin' rm -f "cppgoslin/parser/KnownGrammars.h" rm -f "src/domain/LipidClasses.cpp" rm -f "cppgoslin/domain/ClassesEnum.h" rm -f cppgoslin/domain/*.o rm -f cppgoslin/parser/*.o rm -f cppgoslin/tests/*.o rm -f libcppGoslin.dll rm -f *Test rm -f writeGrammarsHeader rm -f writeLipidEnums rm -f libcppGoslin.a make[1]: Leaving directory '/f/biocbuild/bbs-3.20-bioc/meat/rgoslin/src/cppgoslin' make[1]: Entering directory '/f/biocbuild/bbs-3.20-bioc/meat/rgoslin/src/cppgoslin' g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I . -o writeGrammarsHeader writeGrammarsHeader.cpp && ".\writeGrammarsHeader.exe" "cppgoslin/parser/KnownGrammars.h" g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I . -o writeLipidEnums writeLipidEnums.cpp src/domain/StringFunctions.cpp src/parser/SumFormulaParserEventHandler.cpp src/parser/ParserClasses.cpp && ".\writeLipidEnums.exe" "src/domain/LipidClasses.cpp" g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/domain/Adduct.o -c src/domain/Adduct.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/domain/LipidMolecularSpecies.o -c src/domain/LipidMolecularSpecies.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/domain/LipidSnPosition.o -c src/domain/LipidSnPosition.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/domain/LipidStructureDefined.o -c src/domain/LipidStructureDefined.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/domain/FattyAcid.o -c src/domain/FattyAcid.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/domain/LipidAdduct.o -c src/domain/LipidAdduct.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/domain/LipidSpecies.o -c src/domain/LipidSpecies.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/domain/LipidFullStructure.o -c src/domain/LipidFullStructure.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/domain/LipidCompleteStructure.o -c src/domain/LipidCompleteStructure.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/domain/LipidSpeciesInfo.o -c src/domain/LipidSpeciesInfo.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/domain/StringFunctions.o -c src/domain/StringFunctions.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/domain/LipidClasses.o -c src/domain/LipidClasses.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/domain/DoubleBonds.o -c src/domain/DoubleBonds.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/domain/FunctionalGroup.o -c src/domain/FunctionalGroup.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/domain/Headgroup.o -c src/domain/Headgroup.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/domain/Cycle.o -c src/domain/Cycle.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/domain/GenericDatastructures.o -c src/domain/GenericDatastructures.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/parser/ParserClasses.o -c src/parser/ParserClasses.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/parser/KnownParsers.o -c src/parser/KnownParsers.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/parser/GoslinParserEventHandler.o -c src/parser/GoslinParserEventHandler.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/parser/LipidMapsParserEventHandler.o -c src/parser/LipidMapsParserEventHandler.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/parser/SwissLipidsParserEventHandler.o -c src/parser/SwissLipidsParserEventHandler.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/parser/HmdbParserEventHandler.o -c src/parser/HmdbParserEventHandler.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/parser/SumFormulaParserEventHandler.o -c src/parser/SumFormulaParserEventHandler.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/parser/SumFormulaParser.o -c src/parser/SumFormulaParser.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/parser/ShorthandParserEventHandler.o -c src/parser/ShorthandParserEventHandler.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/parser/FattyAcidParserEventHandler.o -c src/parser/FattyAcidParserEventHandler.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/parser/LipidBaseParserEventHandler.o -c src/parser/LipidBaseParserEventHandler.cpp ar rcs libcppGoslin.a src/domain/Adduct.o src/domain/LipidMolecularSpecies.o src/domain/LipidSnPosition.o src/domain/LipidStructureDefined.o src/domain/FattyAcid.o src/domain/LipidAdduct.o src/domain/LipidSpecies.o src/domain/LipidFullStructure.o src/domain/LipidCompleteStructure.o src/domain/LipidSpeciesInfo.o src/domain/StringFunctions.o src/domain/LipidClasses.o src/domain/DoubleBonds.o src/domain/FunctionalGroup.o src/domain/Headgroup.o src/domain/Cycle.o src/domain/GenericDatastructures.o src/parser/ParserClasses.o src/parser/KnownParsers.o src/parser/GoslinParserEventHandler.o src/parser/LipidMapsParserEventHandler.o src/parser/SwissLipidsParserEventHandler.o src/parser/HmdbParserEventHandler.o src/parser/SumFormulaParserEventHandler.o src/parser/SumFormulaParser.o src/parser/ShorthandParserEventHandler.o src/parser/FattyAcidParserEventHandler.o src/parser/LipidBaseParserEventHandler.o make[1]: Leaving directory '/f/biocbuild/bbs-3.20-bioc/meat/rgoslin/src/cppgoslin' g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"." -I"./cppgoslin" -I"./cppgoslin/cppgoslin" -I"./cppgoslin/cppgoslin/domain" -I"./cppgoslin/cppgoslin/parser" -I'F:/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"." -I"./cppgoslin" -I"./cppgoslin/cppgoslin" -I"./cppgoslin/cppgoslin/domain" -I"./cppgoslin/cppgoslin/parser" -I'F:/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rgoslin.cpp -o rgoslin.o g++ -shared -s -static-libgcc -o rgoslin.dll tmp.def RcppExports.o rgoslin.o cppgoslin/libcppGoslin.a -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.20-bioc/R/bin/x64 -lR installing to F:/biocbuild/bbs-3.20-bioc/R/library/00LOCK-rgoslin/00new/rgoslin/libs/x64 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rgoslin)