Back to Multiple platform build/check report for BioC 3.20:   simplified   long
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This page was generated on 2024-11-07 12:04 -0500 (Thu, 07 Nov 2024).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.1 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4505
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4765
palomino8Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4506
lconwaymacOS 12.7.1 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4539
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.4.1 (2024-06-14) -- "Race for Your Life" 4493
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1514/2289HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
paxtoolsr 1.40.0  (landing page)
Augustin Luna
Snapshot Date: 2024-11-06 13:40 -0500 (Wed, 06 Nov 2024)
git_url: https://git.bioconductor.org/packages/paxtoolsr
git_branch: RELEASE_3_20
git_last_commit: 1f68f19
git_last_commit_date: 2024-10-29 09:55:39 -0500 (Tue, 29 Oct 2024)
teran2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped
palomino8Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  ERROR    ERROR  skipped

BUILD results for paxtoolsr on nebbiolo2

To the developers/maintainers of the paxtoolsr package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/paxtoolsr.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: paxtoolsr
Version: 1.40.0
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 paxtoolsr
StartedAt: 2024-11-06 18:25:16 -0500 (Wed, 06 Nov 2024)
EndedAt: 2024-11-06 18:25:36 -0500 (Wed, 06 Nov 2024)
EllapsedTime: 20.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 paxtoolsr
###
##############################################################################
##############################################################################


* checking for file ‘paxtoolsr/DESCRIPTION’ ... OK
* preparing ‘paxtoolsr’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘using_paxtoolsr.Rmd’ using rmarkdown
2024-11-06 18:25:24,599 491  [main] INFO  org.biopax.paxtools.PaxtoolsMain  - toSif: not blacklisting ubiquitous molecules (no blacklist.txt found)
2024-11-06 18:25:25,113 1005 [main] INFO  org.biopax.paxtools.PaxtoolsMain  - toSifnx: not blacklisting ubiquitous molecules (no blacklist.txt found)

Quitting from lines 169-171 [searchResultsExampleVerbose] (using_paxtoolsr.Rmd)
Error: processing vignette 'using_paxtoolsr.Rmd' failed with diagnostics:
ERROR: Code: 404 Message: Unknown Error (PC Webservice Error)
--- failed re-building ‘using_paxtoolsr.Rmd’

SUMMARY: processing the following file failed:
  ‘using_paxtoolsr.Rmd’

Error: Vignette re-building failed.
Execution halted