Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-08-19 11:41 -0400 (Mon, 19 Aug 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4703 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4440 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4472 |
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4420 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4413 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1459/2255 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
orthos 1.3.0 (landing page) Panagiotis Papasaikas
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | ERROR | skipped | ||||||||||
To the developers/maintainers of the orthos package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/orthos.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: orthos |
Version: 1.3.0 |
Command: chmod a+r orthos -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data orthos |
StartedAt: 2024-08-18 20:20:56 -0400 (Sun, 18 Aug 2024) |
EndedAt: 2024-08-18 20:24:55 -0400 (Sun, 18 Aug 2024) |
EllapsedTime: 238.7 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r orthos -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data orthos ### ############################################################################## ############################################################################## * checking for file 'orthos/DESCRIPTION' ... OK * preparing 'orthos': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'orthosIntro.Rmd' using rmarkdown Channels: - conda-forge Platform: win-64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: C:\Users\biocbuild\.basilisk\1.17.2\orthos\1.3.0\orthos added / updated specs: - python=3.8.13 The following NEW packages will be INSTALLED: bzip2 conda-forge/win-64::bzip2-1.0.8-h2466b09_7 ca-certificates conda-forge/win-64::ca-certificates-2024.7.4-h56e8100_0 libffi conda-forge/win-64::libffi-3.4.2-h8ffe710_5 libsqlite conda-forge/win-64::libsqlite-3.46.0-h2466b09_0 libzlib conda-forge/win-64::libzlib-1.3.1-h2466b09_1 openssl conda-forge/win-64::openssl-3.3.1-h2466b09_2 pip conda-forge/noarch::pip-24.2-pyhd8ed1ab_0 python conda-forge/win-64::python-3.8.13-hcf16a7b_0_cpython setuptools conda-forge/noarch::setuptools-72.1.0-pyhd8ed1ab_0 sqlite conda-forge/win-64::sqlite-3.46.0-h2466b09_0 tk conda-forge/win-64::tk-8.6.13-h5226925_1 ucrt conda-forge/win-64::ucrt-10.0.22621.0-h57928b3_0 vc conda-forge/win-64::vc-14.3-h8a93ad2_20 vc14_runtime conda-forge/win-64::vc14_runtime-14.40.33810-ha82c5b3_20 vs2015_runtime conda-forge/win-64::vs2015_runtime-14.40.33810-h3bf8584_20 wheel conda-forge/noarch::wheel-0.44.0-pyhd8ed1ab_0 xz conda-forge/win-64::xz-5.2.6-h8d14728_0 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Channels: - conda-forge Platform: win-64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 24.3.0 latest version: 24.7.1 Please update conda by running $ conda update -n base -c conda-forge conda ## Package Plan ## environment location: C:\Users\biocbuild\.basilisk\1.17.2\orthos\1.3.0\orthos added / updated specs: - python=3.8.13 The following packages will be DOWNGRADED: openssl 3.3.1-h2466b09_2 --> 1.1.1w-hcfcfb64_0 python 3.8.13-hcf16a7b_0_cpython --> 3.8.13-h9a09f29_0_cpython Downloading and Extracting Packages: ...working... done Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Channels: - conda-forge Platform: win-64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... Quitting from lines 281-285 [unnamed-chunk-4] (orthosIntro.Rmd) Error: processing vignette 'orthosIntro.Rmd' failed with diagnostics: one or more Python packages failed to install [error code 5] --- failed re-building 'orthosIntro.Rmd' SUMMARY: processing the following file failed: 'orthosIntro.Rmd' Error: Vignette re-building failed. Execution halted