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This page was generated on 2024-06-11 15:40 -0400 (Tue, 11 Jun 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" 4679
palomino4Windows Server 2022 Datacenterx644.4.0 RC (2024-04-16 r86468 ucrt) -- "Puppy Cup" 4414
merida1macOS 12.7.4 Montereyx86_644.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" 4441
kjohnson1macOS 13.6.6 Venturaarm644.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" 4394
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1439/2239HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
oppar 1.33.0  (landing page)
Soroor Hediyeh zadeh
Snapshot Date: 2024-06-09 14:00 -0400 (Sun, 09 Jun 2024)
git_url: https://git.bioconductor.org/packages/oppar
git_branch: devel
git_last_commit: 0170bdd
git_last_commit_date: 2024-04-30 10:50:23 -0400 (Tue, 30 Apr 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
merida1macOS 12.7.4 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published


BUILD BIN results for oppar on palomino4

To the developers/maintainers of the oppar package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/oppar.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: oppar
Version: 1.33.0
Command: rm -rf oppar.buildbin-libdir && mkdir oppar.buildbin-libdir && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL --build --library=oppar.buildbin-libdir oppar_1.33.0.tar.gz
StartedAt: 2024-06-10 14:28:54 -0400 (Mon, 10 Jun 2024)
EndedAt: 2024-06-10 14:30:49 -0400 (Mon, 10 Jun 2024)
EllapsedTime: 114.9 seconds
RetCode: 0
Status:   OK  
PackageFile: oppar_1.33.0.zip
PackageFileSize: 5.237 MiB

Command output

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### Running command:
###
###   rm -rf oppar.buildbin-libdir && mkdir oppar.buildbin-libdir && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL --build --library=oppar.buildbin-libdir oppar_1.33.0.tar.gz
###
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* installing *source* package 'oppar' ...
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 13.2.0'
gcc  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c R_init_oppar.c -o R_init_oppar.o
gcc  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c kernel_estimation.c -o kernel_estimation.o
gcc  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c ks_test.c -o ks_test.o
ks_test.c: In function 'ks_sample':
ks_test.c:22:16: warning: unused variable 'mx_value' [-Wunused-variable]
   22 |         double mx_value = 0.0;
      |                ^~~~~~~~
gcc -shared -s -static-libgcc -o oppar.dll tmp.def R_init_oppar.o kernel_estimation.o ks_test.o -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.20-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.20-bioc/meat/oppar.buildbin-libdir/00LOCK-oppar/00new/oppar/libs/x64
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'gsva' in package 'oppar'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: multiple methods tables found for 'gsva'
** testing if installed package can be loaded from final location
Warning: multiple methods tables found for 'gsva'
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'oppar' as oppar_1.33.0.zip
* DONE (oppar)