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### Running command:
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###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data miRNAtap
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* checking for file ‘miRNAtap/DESCRIPTION’ ... OK
* preparing ‘miRNAtap’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘miRNAtap.Rnw’ using Sweave
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: BiocGenerics

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, table, tapply,
    union, unique, unsplit, which.max, which.min

Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: IRanges
Loading required package: S4Vectors

Attaching package: ‘S4Vectors’

The following object is masked from ‘package:utils’:

    findMatches

The following objects are masked from ‘package:base’:

    I, expand.grid, unname

Loading required package: graph
Loading required package: GO.db

Loading required package: SparseM

groupGOTerms: 	GOBPTerm, GOMFTerm, GOCCTerm environments built.

Attaching package: ‘topGO’

The following object is masked from ‘package:IRanges’:

    members


Loading required package: miRNAtap.db
there is no package called ‘miRNAtap.db’Loading required package: miRNAtap.db
there is no package called ‘miRNAtap.db’Loading required package: miRNAtap.db
there is no package called ‘miRNAtap.db’Loading required package: miRNAtap.db
there is no package called ‘miRNAtap.db’Loading required package: miRNAtap.db
there is no package called ‘miRNAtap.db’Warning in getPredictedTargets(mir, species = "hsa", method = "geom", min_src = 2) :
  no targets found for mirna miR-10b
Loading required package: miRNAtap.db
there is no package called ‘miRNAtap.db’Loading required package: miRNAtap.db
there is no package called ‘miRNAtap.db’Loading required package: miRNAtap.db
there is no package called ‘miRNAtap.db’Loading required package: miRNAtap.db
there is no package called ‘miRNAtap.db’Loading required package: miRNAtap.db
there is no package called ‘miRNAtap.db’Warning in getPredictedTargets(mir, species = "hsa", method = "min", min_src = 2) :
  no targets found for mirna miR-10b
Loading required package: miRNAtap.db
there is no package called ‘miRNAtap.db’Loading required package: miRNAtap.db
there is no package called ‘miRNAtap.db’Loading required package: miRNAtap.db
there is no package called ‘miRNAtap.db’Loading required package: miRNAtap.db
there is no package called ‘miRNAtap.db’Loading required package: miRNAtap.db
there is no package called ‘miRNAtap.db’Warning in getPredictedTargets(mir, species = "rno", method = "geom", min_src = 2) :
  no targets found for mirna miR-10b

Error: processing vignette 'miRNAtap.Rnw' failed with diagnostics:
 chunk 9 
Error in .local(.Object, ...) : allGenes must be a named vector

--- failed re-building ‘miRNAtap.Rnw’

SUMMARY: processing the following file failed:
  ‘miRNAtap.Rnw’

Error: Vignette re-building failed.
Execution halted