Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-07-08 11:45 -0400 (Mon, 08 Jul 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4643 |
palomino6 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4414 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4442 |
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4391 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 3833 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1211/2243 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
methylPipe 1.39.0 (landing page) Mattia Furlan
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | WARNINGS | ![]() | ||||||||
palomino6 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | ![]() | ||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | WARNINGS | OK | ![]() | ||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | NA | ERROR | skipped | ||||||||||
To the developers/maintainers of the methylPipe package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/methylPipe.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
Package: methylPipe |
Version: 1.39.0 |
Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data methylPipe |
StartedAt: 2024-07-06 00:04:45 -0000 (Sat, 06 Jul 2024) |
EndedAt: 2024-07-06 00:12:03 -0000 (Sat, 06 Jul 2024) |
EllapsedTime: 438.6 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data methylPipe ### ############################################################################## ############################################################################## * checking for file ‘methylPipe/DESCRIPTION’ ... OK * preparing ‘methylPipe’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘methylPipe.rnw’ using knitr Warning in in_dir(input_dir(), expr) : You changed the working directory to /home/biocbuild/tmp/RtmpK4F8HO (probably via setwd()). It will be restored to /home/biocbuild/tmp/RtmppR9pI0/Rbuild2e85775285afe/methylPipe/vignettes. See the Note section in ?knitr::knit Quitting from lines 240-245 [pmeth] (methylPipe.rnw) Error: processing vignette 'methylPipe.rnw' failed with diagnostics: There doesn't seem to be any chromosome length data available for genome 'hg18' at UCSC or the service is temporarily down. --- failed re-building ‘methylPipe.rnw’ SUMMARY: processing the following file failed: ‘methylPipe.rnw’ Error: Vignette re-building failed. Execution halted