Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-07-06 11:44 -0400 (Sat, 06 Jul 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4643 |
palomino6 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4414 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4442 |
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4391 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 3833 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1193/2243 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
metaseqR2 1.17.0 (landing page) Panagiotis Moulos
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino6 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK | ![]() | ||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | NA | ERROR | skipped | ||||||||||
To the developers/maintainers of the metaseqR2 package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/metaseqR2.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
Package: metaseqR2 |
Version: 1.17.0 |
Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data metaseqR2 |
StartedAt: 2024-07-05 23:59:46 -0000 (Fri, 05 Jul 2024) |
EndedAt: 2024-07-06 00:30:07 -0000 (Sat, 06 Jul 2024) |
EllapsedTime: 1821.4 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data metaseqR2 ### ############################################################################## ############################################################################## * checking for file ‘metaseqR2/DESCRIPTION’ ... OK * preparing ‘metaseqR2’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘metaseqr2-annotation.Rmd’ using rmarkdown trying URL 'http://hgdownload.cse.ucsc.edu/goldenPath/eboVir3/database/ncbiGene.txt.gz' Content type 'application/x-gzip' length 238 bytes ================================================== downloaded 238 bytes trying URL 'http://hgdownload.cse.ucsc.edu/goldenPath/eboVir3/database/chromInfo.txt.gz' Content type 'application/x-gzip' length 71 bytes ================================================== downloaded 71 bytes --- finished re-building ‘metaseqr2-annotation.Rmd’ --- re-building ‘metaseqr2-statistics.Rmd’ using rmarkdown Warning: call dbDisconnect() when finished working with a connection adding: home/biocbuild/tmp/Rtmp0hQhzW/test1/plots/qc/correlation_correlogram.png (deflated 2%) adding: home/biocbuild/tmp/Rtmp0hQhzW/test1/plots/qc/correlation_heatmap.png (deflated 11%) adding: home/biocbuild/tmp/Rtmp0hQhzW/test1/plots/qc/correlation_pairs.png (deflated 1%) adding: home/biocbuild/tmp/Rtmp0hQhzW/test1/plots/qc/filtered_genes.png (deflated 8%) adding: home/biocbuild/tmp/Rtmp0hQhzW/test1/plots/qc/mds.png (deflated 47%) adding: home/biocbuild/tmp/Rtmp0hQhzW/test1/plots/normalization/boxplot_normalized.png (deflated 22%) adding: home/biocbuild/tmp/Rtmp0hQhzW/test1/plots/normalization/boxplot_raw.png (deflated 20%) adding: home/biocbuild/tmp/Rtmp0hQhzW/test1/plots/normalization/gcbias_normalized.png (deflated 15%) adding: home/biocbuild/tmp/Rtmp0hQhzW/test1/plots/normalization/gcbias_raw.png (deflated 14%) adding: home/biocbuild/tmp/Rtmp0hQhzW/test1/plots/normalization/lengthbias_normalized.png (deflated 12%) adding: home/biocbuild/tmp/Rtmp0hQhzW/test1/plots/normalization/lengthbias_raw.png (deflated 12%) adding: home/biocbuild/tmp/Rtmp0hQhzW/test1/plots/normalization/meandiff_normalized_adult_8_weeks_a8w_1_a8w_2.png (deflated 4%) adding: home/biocbuild/tmp/Rtmp0hQhzW/test1/plots/normalization/meandiff_normalized_e14.5_e14.5_1_e14.5_2.png (deflated 4%) 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home/biocbuild/tmp/Rtmp0hQhzW/test1/plots/statistics/mastat_plot_adult_8_weeks_vs_e14.5.pdf (deflated 5%) adding: home/biocbuild/tmp/Rtmp0hQhzW/test1/plots/statistics/volcano_plot_adult_8_weeks_vs_e14.5.pdf (deflated 3%) trying URL 'https://raw.github.com/HubSpot/pace/v1.0.0/pace.min.js' Content type 'text/plain; charset=utf-8' length 12363 bytes (12 KB) ================================================== downloaded 12 KB trying URL 'https://code.highcharts.com/highcharts.js' downloaded 271 KB trying URL 'https://code.highcharts.com/highcharts-more.js' downloaded 95 KB trying URL 'https://code.highcharts.com/modules/exporting.js' downloaded 19 KB trying URL 'https://code.highcharts.com/modules/offline-exporting.js' downloaded 9830 bytes trying URL 'https://code.highcharts.com/modules/export-data.js' downloaded 12 KB trying URL 'http://jvenn.toulouse.inrae.fr/app/js/canvas2svg.js' Content type 'text/javascript' length 35122 bytes (34 KB) ================================================== downloaded 34 KB trying URL 'http://jvenn.toulouse.inrae.fr/app/js/jvenn.min.js' Content type 'text/javascript' length 100524 bytes (98 KB) ================================================== downloaded 98 KB trying URL 'https://unpkg.com/dexie@2.0.4/dist/dexie.min.js' downloaded 55 KB adding: home/biocbuild/tmp/Rtmp0hQhzW/test2/plots/qc/correlation_correlogram.png (deflated 2%) adding: home/biocbuild/tmp/Rtmp0hQhzW/test2/plots/qc/correlation_heatmap.png (deflated 11%) adding: home/biocbuild/tmp/Rtmp0hQhzW/test2/plots/qc/correlation_pairs.png (deflated 1%) adding: home/biocbuild/tmp/Rtmp0hQhzW/test2/plots/qc/filtered_genes.png (deflated 8%) adding: home/biocbuild/tmp/Rtmp0hQhzW/test2/plots/qc/mds.png (deflated 47%) adding: home/biocbuild/tmp/Rtmp0hQhzW/test2/plots/normalization/boxplot_normalized.png (deflated 15%) adding: home/biocbuild/tmp/Rtmp0hQhzW/test2/plots/normalization/boxplot_raw.png (deflated 20%) adding: 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'https://code.highcharts.com/highcharts.js' downloaded 271 KB trying URL 'https://code.highcharts.com/highcharts-more.js' downloaded 95 KB trying URL 'https://code.highcharts.com/modules/exporting.js' downloaded 19 KB trying URL 'https://code.highcharts.com/modules/offline-exporting.js' downloaded 9830 bytes trying URL 'https://code.highcharts.com/modules/export-data.js' downloaded 12 KB trying URL 'http://jvenn.toulouse.inrae.fr/app/js/canvas2svg.js' Content type 'text/javascript' length 35122 bytes (34 KB) ================================================== downloaded 34 KB trying URL 'http://jvenn.toulouse.inrae.fr/app/js/jvenn.min.js' Quitting from lines 380-412 [example-4] (metaseqr2-statistics.Rmd) Error: processing vignette 'metaseqr2-statistics.Rmd' failed with diagnostics: cannot open URL 'http://jvenn.toulouse.inrae.fr/app/js/jvenn.min.js' --- failed re-building ‘metaseqr2-statistics.Rmd’ SUMMARY: processing the following file failed: ‘metaseqr2-statistics.Rmd’ Error: Vignette 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