Back to Multiple platform build/check report for BioC 3.20:   simplified   long
ABCDEFGHIJKL[M]NOPQRSTUVWXYZ

This page was generated on 2024-07-06 11:39 -0400 (Sat, 06 Jul 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4643
palomino6Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4414
lconwaymacOS 12.7.1 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4442
kjohnson3macOS 13.6.5 Venturaarm644.4.1 (2024-06-14) -- "Race for Your Life" 4391
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.4.1 (2024-06-14) -- "Race for Your Life" 3833
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1179/2243HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
metabolomicsWorkbenchR 1.15.2  (landing page)
Gavin Rhys Lloyd
Snapshot Date: 2024-07-05 14:00 -0400 (Fri, 05 Jul 2024)
git_url: https://git.bioconductor.org/packages/metabolomicsWorkbenchR
git_branch: devel
git_last_commit: cb116fa
git_last_commit_date: 2024-07-01 06:51:57 -0400 (Mon, 01 Jul 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino6Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.6.5 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  NA    ERROR  skipped

BUILD results for metabolomicsWorkbenchR on nebbiolo2

To the developers/maintainers of the metabolomicsWorkbenchR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/metabolomicsWorkbenchR.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: metabolomicsWorkbenchR
Version: 1.15.2
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 metabolomicsWorkbenchR
StartedAt: 2024-07-05 18:07:27 -0400 (Fri, 05 Jul 2024)
EndedAt: 2024-07-05 18:08:14 -0400 (Fri, 05 Jul 2024)
EllapsedTime: 47.1 seconds
RetCode: 0
Status:   OK  
PackageFile: metabolomicsWorkbenchR_1.15.2.tar.gz
PackageFileSize: 2.391 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 metabolomicsWorkbenchR
###
##############################################################################
##############################################################################


* checking for file ‘metabolomicsWorkbenchR/DESCRIPTION’ ... OK
* preparing ‘metabolomicsWorkbenchR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... OK
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
* looking to see if a ‘data/datalist’ file should be added
* adding MD5 file
* building ‘metabolomicsWorkbenchR_1.15.2.tar.gz’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘metabolomicsWorkbenchR/vignettes/introduction/0/www.metabolomicsworkbench.org/rest/compound/regno/11/’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘metabolomicsWorkbenchR/vignettes/introduction/0/www.metabolomicsworkbench.org/rest/compound/regno/11/all.json’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘metabolomicsWorkbenchR/vignettes/introduction/0/www.metabolomicsworkbench.org/rest/gene/gene_name/acetyl-CoA/’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘metabolomicsWorkbenchR/vignettes/introduction/0/www.metabolomicsworkbench.org/rest/gene/gene_name/acetyl-CoA/all.json’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘metabolomicsWorkbenchR/vignettes/introduction/0/www.metabolomicsworkbench.org/rest/study/study_id/ST000001/’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘metabolomicsWorkbenchR/vignettes/introduction/0/www.metabolomicsworkbench.org/rest/study/study_id/ST000001/data.json’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘metabolomicsWorkbenchR/vignettes/introduction/0/www.metabolomicsworkbench.org/rest/study/study_id/ST000001/factors.json’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘metabolomicsWorkbenchR/vignettes/introduction/0/www.metabolomicsworkbench.org/rest/study/study_id/ST000001/summary.json’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘metabolomicsWorkbenchR/vignettes/introduction/0/www.metabolomicsworkbench.org/rest/study/study_id/ST000009/’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘metabolomicsWorkbenchR/vignettes/introduction/0/www.metabolomicsworkbench.org/rest/study/study_id/ST000009/data.json’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘metabolomicsWorkbenchR/vignettes/introduction/0/www.metabolomicsworkbench.org/rest/study/study_id/ST000009/factors.json’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘metabolomicsWorkbenchR/vignettes/introduction/0/www.metabolomicsworkbench.org/rest/study/study_id/ST000009/summary.json’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘metabolomicsWorkbenchR/vignettes/introduction/0/www.metabolomicsworkbench.org/rest/study/study_id/ignored/’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘metabolomicsWorkbenchR/vignettes/introduction/0/www.metabolomicsworkbench.org/rest/study/study_id/ignored/untarg_studies.json’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘metabolomicsWorkbenchR/vignettes/introduction/0/www.metabolomicsworkbench.org/rest/study/study_title/’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘metabolomicsWorkbenchR/vignettes/introduction/0/www.metabolomicsworkbench.org/rest/study/study_title/Diabetes/’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘metabolomicsWorkbenchR/vignettes/introduction/0/www.metabolomicsworkbench.org/rest/study/study_title/Diabetes/summary.json’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘metabolomicsWorkbenchR/vignettes/structToolbox_example/0/www.metabolomicsworkbench.org/rest/study/study_id/’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘metabolomicsWorkbenchR/vignettes/structToolbox_example/0/www.metabolomicsworkbench.org/rest/study/study_id/ST000010/’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘metabolomicsWorkbenchR/vignettes/structToolbox_example/0/www.metabolomicsworkbench.org/rest/study/study_id/ST000010/summary.json’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘metabolomicsWorkbenchR/vignettes/structToolbox_example/0/www.metabolomicsworkbench.org/rest/study/study_id/ignored/’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘metabolomicsWorkbenchR/vignettes/structToolbox_example/0/www.metabolomicsworkbench.org/rest/study/study_id/ignored/untarg_studies.json’