Multiple platform build/check report for BioC 3.20 - BUILD results for metaMS on kunpeng2

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 22.04.3 LTS)	x86_64	4.4.1 (2024-06-14) -- "Race for Your Life"	4643
palomino6	Windows Server 2022 Datacenter	x64	4.4.1 (2024-06-14 ucrt) -- "Race for Your Life"	4414
lconway	macOS 12.7.1 Monterey	x86_64	4.4.1 (2024-06-14) -- "Race for Your Life"	4442
kjohnson3	macOS 13.6.5 Ventura	arm64	4.4.1 (2024-06-14) -- "Race for Your Life"	4391
kunpeng2	Linux (openEuler 22.03 LTS-SP1)	aarch64	4.4.1 (2024-06-14) -- "Race for Your Life"	3833
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for metaMS on kunpeng2

To the developers/maintainers of the metaMS package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/metaMS.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results

Summary

Package: metaMS

Version: 1.41.0

Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data metaMS

StartedAt: 2024-07-05 23:58:42 -0000 (Fri, 05 Jul 2024)

EndedAt: 2024-07-06 00:00:03 -0000 (Sat, 06 Jul 2024)

EllapsedTime: 80.1 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data metaMS
###
##############################################################################
##############################################################################


* checking for file ‘metaMS/DESCRIPTION’ ... OK
* preparing ‘metaMS’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘runGC.Rnw’ using Sweave
Loading required package: CAMERA
Loading required package: Biobase
Loading required package: BiocGenerics

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, table, tapply,
    union, unique, unsplit, which.max, which.min

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: xcms
Loading required package: BiocParallel

This is xcms version 4.3.1 


Attaching package: ‘xcms’

The following object is masked from ‘package:stats’:

    sigma


Error: processing vignette 'runGC.Rnw' failed with diagnostics:
 chunk 19 
Error in library(metaMSdata) : there is no package called ‘metaMSdata’

--- failed re-building ‘runGC.Rnw’

--- re-building ‘runLC.Rnw’ using Sweave

Error: processing vignette 'runLC.Rnw' failed with diagnostics:
 chunk 2 
Error in library(metaMSdata) : there is no package called ‘metaMSdata’

--- failed re-building ‘runLC.Rnw’

SUMMARY: processing the following files failed:
  ‘runGC.Rnw’ ‘runLC.Rnw’

Error: Vignette re-building failed.
Execution halted