Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-08-21 11:46 -0400 (Wed, 21 Aug 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4703 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4440 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4472 |
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4421 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4414 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1107/2255 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
lpsymphony 1.33.0 (landing page) Vladislav Kim
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | WARNINGS | ![]() | ||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | ![]() | ||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | ![]() | ||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | WARNINGS | OK | ![]() | ||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | ERROR | ERROR | skipped | ||||||||||
To the developers/maintainers of the lpsymphony package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/lpsymphony.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
Package: lpsymphony |
Version: 1.33.0 |
Command: /home/biocbuild/R/R/bin/R CMD INSTALL lpsymphony |
StartedAt: 2024-08-20 19:11:39 -0000 (Tue, 20 Aug 2024) |
EndedAt: 2024-08-20 19:12:01 -0000 (Tue, 20 Aug 2024) |
EllapsedTime: 21.5 seconds |
RetCode: 1 |
Status: ERROR |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL lpsymphony ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.4.1/site-library’ * installing *source* package ‘lpsymphony’ ... ** using staged installation CXX is g++ -std=gnu++17 CXX is g++ -std=gnu++14 configure: loading site script /home/biocbuild/bbs-3.20-bioc/meat/lpsymphony/src/SYMPHONY/share/config.site checking build system type... ./config.guess: unable to guess system type This script, last modified 2007-05-17, has failed to recognize the operating system you are using. It is advised that you download the most up to date version of the config scripts from http://savannah.gnu.org/cgi-bin/viewcvs/*checkout*/config/config/config.guess and http://savannah.gnu.org/cgi-bin/viewcvs/*checkout*/config/config/config.sub If the version you run (./config.guess) is already up to date, please send the following data and any information you think might be pertinent to <config-patches@gnu.org> in order to provide the needed information to handle your system. config.guess timestamp = 2007-05-17 uname -m = aarch64 uname -r = 5.10.0-136.84.0.165.oe2203sp1.aarch64 uname -s = Linux uname -v = #1 SMP Wed Jul 10 15:30:51 CST 2024 /usr/bin/uname -p = aarch64 /bin/uname -X = hostinfo = /bin/universe = /usr/bin/arch -k = /bin/arch = aarch64 /usr/bin/oslevel = /usr/convex/getsysinfo = UNAME_MACHINE = aarch64 UNAME_RELEASE = 5.10.0-136.84.0.165.oe2203sp1.aarch64 UNAME_SYSTEM = Linux UNAME_VERSION = #1 SMP Wed Jul 10 15:30:51 CST 2024 configure: error: cannot guess build type; you must specify one ** libs using C++ compiler: ‘g++ (GCC) 10.3.1’ make[1]: Entering directory '/home/biocbuild/bbs-3.20-bioc/meat/lpsymphony/src/SYMPHONY' make[1]: *** No targets specified and no makefile found. Stop. make[1]: Leaving directory '/home/biocbuild/bbs-3.20-bioc/meat/lpsymphony/src/SYMPHONY' make: *** [Makevars:14: SYMPHONY.ts] Error 2 ERROR: compilation failed for package ‘lpsymphony’ * removing ‘/home/biocbuild/R/R-4.4.1/site-library/lpsymphony’