Back to Multiple platform build/check report for BioC 3.20:   simplified   long
ABCDEFGH[I]JKLMNOPQRSTUVWXYZ

This page was generated on 2024-11-01 12:02 -0400 (Fri, 01 Nov 2024).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.1 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4503
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4763
palomino8Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4506
lconwaymacOS 12.7.1 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4538
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.4.1 (2024-06-14) -- "Race for Your Life" 4493
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1025/2289HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
impute 1.80.0  (landing page)
Balasubramanian Narasimhan
Snapshot Date: 2024-10-31 13:40 -0400 (Thu, 31 Oct 2024)
git_url: https://git.bioconductor.org/packages/impute
git_branch: RELEASE_3_20
git_last_commit: 6dd5ed4
git_last_commit_date: 2024-10-29 09:22:27 -0400 (Tue, 29 Oct 2024)
teran2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    WARNINGS  
palomino8Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    WARNINGS  

INSTALL results for impute on teran2

To the developers/maintainers of the impute package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/impute.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: impute
Version: 1.80.0
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL impute
StartedAt: 2024-10-31 15:02:25 -0400 (Thu, 31 Oct 2024)
EndedAt: 2024-10-31 15:02:28 -0400 (Thu, 31 Oct 2024)
EllapsedTime: 3.0 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL impute
###
##############################################################################
##############################################################################


* installing to library ‘/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library’
* installing *source* package ‘impute’ ...
** using staged installation
** libs
using Fortran compiler: ‘GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0’
gfortran  -fpic  -g -O2  -Wall -c knnimpute.f -o knnimpute.o
f951: Warning: Nonconforming tab character in column 1 of line 89 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 91 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 92 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 93 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 94 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 95 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 96 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 97 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 98 [-Wtabs]
f951: Warning: Nonconforming tab character in column 3 of line 99 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 100 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 101 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 102 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 103 [-Wtabs]
f951: Warning: Nonconforming tab character in column 3 of line 104 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 105 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 106 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 107 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 108 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 109 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 110 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 111 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 112 [-Wtabs]
f951: Warning: Nonconforming tab character in column 3 of line 113 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 114 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 115 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 116 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 117 [-Wtabs]
f951: Warning: Nonconforming tab character in column 3 of line 118 [-Wtabs]
f951: Warning: Nonconforming tab character in column 3 of line 119 [-Wtabs]
f951: Warning: Nonconforming tab character in column 3 of line 120 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 121 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 122 [-Wtabs]
knnimpute.f:99:72:

   99 | 20                        pos(k1+1) = pos(k1)
      |                                                                             1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 20 at (1)
knnimpute.f:113:72:

  113 | 35                        pos(k1+1) = pos(k1)
      |                                                                             1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 35 at (1)
knnimpute.f:168:72:

  168 |       ratio=dabs(dnew-dold)/dold
      |                                                                        ^
Warning: ‘dold’ may be used uninitialized [-Wmaybe-uninitialized]
knnimpute.f:132:33:

  132 |       double precision ratio,dold,dnew
      |                                 ^
note: ‘dold’ was declared here
gcc -shared -L/home/biocbuild/bbs-3.20-bioc/R/lib -L/usr/local/lib -o impute.so knnimpute.o -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.20-bioc/R/lib -lR
installing to /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/00LOCK-impute/00new/impute/libs
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (impute)