Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-08-21 11:41 -0400 (Wed, 21 Aug 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4703 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4440 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4472 |
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4421 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4414 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 854/2255 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
gINTomics 1.1.0 (landing page) Angelo Velle
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ![]() | ||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK | ![]() | ||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the gINTomics package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/gINTomics.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: gINTomics |
Version: 1.1.0 |
Command: F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL gINTomics |
StartedAt: 2024-08-20 16:11:15 -0400 (Tue, 20 Aug 2024) |
EndedAt: 2024-08-20 16:13:21 -0400 (Tue, 20 Aug 2024) |
EllapsedTime: 125.7 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL gINTomics ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.20-bioc/R/library' * installing *source* package 'gINTomics' ... ** using staged installation ** R [2024-08-20 16:11:34] [TRACE] [OmnipathR] Reading JSON from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/cache.json` (encoding: UTF-8). [2024-08-20 16:11:34] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-08-20 16:11:34] [INFO] [OmnipathR] Initialized cache: `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2024-08-20 16:11:34] [TRACE] [OmnipathR] Running on a build server, wiping cache. [2024-08-20 16:11:34] [TRACE] [OmnipathR] Cache is at `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2024-08-20 16:11:34] [TRACE] [OmnipathR] Contains 1 files. [2024-08-20 16:11:34] [TRACE] [OmnipathR] Cache is locked: FALSE. [2024-08-20 16:11:34] [TRACE] [OmnipathR] Reading JSON from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/cache.json` (encoding: UTF-8). [2024-08-20 16:11:34] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-08-20 16:11:34] [SUCCESS] [OmnipathR] Removing all cache contents from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2024-08-20 16:11:34] [TRACE] [OmnipathR] Pandoc version: `2.7.3`. [2024-08-20 16:11:35] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/R/library/OmnipathR/db/db_def.json` (encoding: UTF-8). [2024-08-20 16:11:35] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-08-20 16:11:35] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/R/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8). [2024-08-20 16:11:35] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-08-20 16:11:35] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/R/library/OmnipathR/internal/urls.json` (encoding: UTF-8). [2024-08-20 16:11:35] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-08-20 16:11:35] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/R/library/OmnipathR/internal/id_types.json` (encoding: UTF-8). [2024-08-20 16:11:35] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-08-20 16:11:35] [TRACE] [OmnipathR] Cache locked: FALSE ** data ** inst ** byte-compile and prepare package for lazy loading [2024-08-20 16:12:12] [TRACE] [OmnipathR] Reading JSON from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/cache.json` (encoding: UTF-8). [2024-08-20 16:12:12] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-08-20 16:12:12] [INFO] [OmnipathR] Initialized cache: `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2024-08-20 16:12:12] [TRACE] [OmnipathR] Running on a build server, wiping cache. [2024-08-20 16:12:12] [TRACE] [OmnipathR] Cache is at `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2024-08-20 16:12:12] [TRACE] [OmnipathR] Contains 1 files. [2024-08-20 16:12:12] [TRACE] [OmnipathR] Cache is locked: FALSE. [2024-08-20 16:12:12] [TRACE] [OmnipathR] Reading JSON from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/cache.json` (encoding: UTF-8). [2024-08-20 16:12:12] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-08-20 16:12:12] [SUCCESS] [OmnipathR] Removing all cache contents from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2024-08-20 16:12:12] [TRACE] [OmnipathR] Pandoc version: `2.7.3`. [2024-08-20 16:12:12] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/R/library/OmnipathR/db/db_def.json` (encoding: UTF-8). [2024-08-20 16:12:12] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-08-20 16:12:12] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/R/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8). [2024-08-20 16:12:12] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-08-20 16:12:13] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/R/library/OmnipathR/internal/urls.json` (encoding: UTF-8). [2024-08-20 16:12:13] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-08-20 16:12:13] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/R/library/OmnipathR/internal/id_types.json` (encoding: UTF-8). [2024-08-20 16:12:13] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-08-20 16:12:13] [TRACE] [OmnipathR] Cache locked: FALSE ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location [2024-08-20 16:12:52] [TRACE] [OmnipathR] Reading JSON from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/cache.json` (encoding: UTF-8). [2024-08-20 16:12:52] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-08-20 16:12:52] [INFO] [OmnipathR] Initialized cache: `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2024-08-20 16:12:52] [TRACE] [OmnipathR] Running on a build server, wiping cache. [2024-08-20 16:12:52] [TRACE] [OmnipathR] Cache is at `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2024-08-20 16:12:52] [TRACE] [OmnipathR] Contains 1 files. [2024-08-20 16:12:53] [TRACE] [OmnipathR] Cache is locked: FALSE. [2024-08-20 16:12:53] [TRACE] [OmnipathR] Reading JSON from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/cache.json` (encoding: UTF-8). [2024-08-20 16:12:53] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-08-20 16:12:53] [SUCCESS] [OmnipathR] Removing all cache contents from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2024-08-20 16:12:53] [TRACE] [OmnipathR] Pandoc version: `2.7.3`. [2024-08-20 16:12:53] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/R/library/OmnipathR/db/db_def.json` (encoding: UTF-8). [2024-08-20 16:12:53] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-08-20 16:12:53] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/R/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8). [2024-08-20 16:12:53] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-08-20 16:12:53] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/R/library/OmnipathR/internal/urls.json` (encoding: UTF-8). [2024-08-20 16:12:53] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-08-20 16:12:53] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/R/library/OmnipathR/internal/id_types.json` (encoding: UTF-8). [2024-08-20 16:12:53] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-08-20 16:12:53] [TRACE] [OmnipathR] Cache locked: FALSE ** testing if installed package can be loaded from final location [2024-08-20 16:13:14] [TRACE] [OmnipathR] Reading JSON from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/cache.json` (encoding: UTF-8). [2024-08-20 16:13:14] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-08-20 16:13:14] [INFO] [OmnipathR] Initialized cache: `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2024-08-20 16:13:14] [TRACE] [OmnipathR] Running on a build server, wiping cache. [2024-08-20 16:13:14] [TRACE] [OmnipathR] Cache is at `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2024-08-20 16:13:14] [TRACE] [OmnipathR] Contains 1 files. [2024-08-20 16:13:14] [TRACE] [OmnipathR] Cache is locked: FALSE. [2024-08-20 16:13:14] [TRACE] [OmnipathR] Reading JSON from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/cache.json` (encoding: UTF-8). [2024-08-20 16:13:14] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-08-20 16:13:14] [SUCCESS] [OmnipathR] Removing all cache contents from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2024-08-20 16:13:14] [TRACE] [OmnipathR] Pandoc version: `2.7.3`. [2024-08-20 16:13:14] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/R/library/OmnipathR/db/db_def.json` (encoding: UTF-8). [2024-08-20 16:13:14] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-08-20 16:13:14] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/R/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8). [2024-08-20 16:13:14] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-08-20 16:13:14] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/R/library/OmnipathR/internal/urls.json` (encoding: UTF-8). [2024-08-20 16:13:14] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-08-20 16:13:14] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/R/library/OmnipathR/internal/id_types.json` (encoding: UTF-8). [2024-08-20 16:13:14] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-08-20 16:13:14] [TRACE] [OmnipathR] Cache locked: FALSE ** testing if installed package keeps a record of temporary installation path * DONE (gINTomics)