Arkadiusz Gladki
| Snapshot Date: 2024-07-12 14:00 -0400 (Fri, 12 Jul 2024) |
| git_url: https://git.bioconductor.org/packages/gDRimport |
| git_branch: devel |
| git_last_commit: b00edeb |
| git_last_commit_date: 2024-07-04 03:12:04 -0400 (Thu, 04 Jul 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-07-13 11:41 -0400 (Sat, 13 Jul 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4677 |
| palomino6 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4416 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4444 |
| kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4393 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4373 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 764/2243 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| gDRimport 1.3.2 (landing page) Arkadiusz Gladki
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino6 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
|
To the developers/maintainers of the gDRimport package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/gDRimport.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: gDRimport |
| Version: 1.3.2 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:gDRimport.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings gDRimport_1.3.2.tar.gz |
| StartedAt: 2024-07-12 20:37:52 -0400 (Fri, 12 Jul 2024) |
| EndedAt: 2024-07-12 20:41:31 -0400 (Fri, 12 Jul 2024) |
| EllapsedTime: 219.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: gDRimport.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:gDRimport.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings gDRimport_1.3.2.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/gDRimport.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: x86_64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘gDRimport/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘gDRimport’ version ‘1.3.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘gDRimport’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
convert_MAE_to_PSet 8.544 0.331 8.948
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
gDRimport.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL gDRimport ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’ * installing *source* package ‘gDRimport’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gDRimport)
gDRimport.Rcheck/tests/testthat.Rout
R version 4.4.1 (2024-06-14) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(gDRimport)
>
> test_check("gDRimport")
2024-07-12 20:40:57 Building assay index...
2024-07-12 20:40:57 Joining rowData to assayIndex...
2024-07-12 20:40:58 Joining colData to assayIndex...
2024-07-12 20:40:58 Joining assays to assayIndex...
2024-07-12 20:41:00 Setting assayIndex key...
2024-07-12 20:41:01 Building LongTable...
2024-07-12 20:41:02 Building assay index...
2024-07-12 20:41:02 Joining rowData to assayIndex...
2024-07-12 20:41:03 Joining colData to assayIndex...
2024-07-12 20:41:03 Joining assays to assayIndex...
2024-07-12 20:41:05 Setting assayIndex key...
2024-07-12 20:41:06 Building LongTable...
INFO [2024-07-12 20:41:06] Manifest loaded successfully
INFO [2024-07-12 20:41:06] Manifest loaded successfully
INFO [2024-07-12 20:41:06] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data1/RawData_day0.xlsx, sheet Readout_0077vs0068_day7
INFO [2024-07-12 20:41:07] Plate 201904190a read; 384 wells
INFO [2024-07-12 20:41:07] Plate 201904190b read; 384 wells
INFO [2024-07-12 20:41:07] Plate 201904190c read; 384 wells
INFO [2024-07-12 20:41:07] Plate 201904190d read; 384 wells
INFO [2024-07-12 20:41:07] Plate 201904190e read; 384 wells
INFO [2024-07-12 20:41:07] Plate 201904190f read; 384 wells
INFO [2024-07-12 20:41:07] File done
INFO [2024-07-12 20:41:07] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data1/RawData_day7.xlsx, sheet Readout_0077vs0068_day7
INFO [2024-07-12 20:41:07] Plate 201904197a read; 384 wells
INFO [2024-07-12 20:41:07] Plate 201904197b read; 384 wells
INFO [2024-07-12 20:41:07] Plate 201904197c read; 384 wells
INFO [2024-07-12 20:41:07] Plate 201904197d read; 384 wells
INFO [2024-07-12 20:41:07] Plate 201904197e read; 384 wells
INFO [2024-07-12 20:41:07] Plate 201904197f read; 384 wells
INFO [2024-07-12 20:41:07] File done
INFO [2024-07-12 20:41:07] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data1/RawData_day0.xlsx, sheet Readout_0077vs0068_day7
INFO [2024-07-12 20:41:08] Plate 201904190a read; 384 wells
INFO [2024-07-12 20:41:08] Plate 201904190b read; 384 wells
INFO [2024-07-12 20:41:08] Plate 201904190c read; 384 wells
INFO [2024-07-12 20:41:08] Plate 201904190d read; 384 wells
INFO [2024-07-12 20:41:08] Plate 201904190e read; 384 wells
INFO [2024-07-12 20:41:08] Plate 201904190f read; 384 wells
INFO [2024-07-12 20:41:08] File done
INFO [2024-07-12 20:41:08] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data1/RawData_day7.xlsx, sheet Readout_0077vs0068_day7
INFO [2024-07-12 20:41:08] Plate 201904197a read; 384 wells
INFO [2024-07-12 20:41:08] Plate 201904197b read; 384 wells
INFO [2024-07-12 20:41:08] Plate 201904197c read; 384 wells
INFO [2024-07-12 20:41:08] Plate 201904197d read; 384 wells
INFO [2024-07-12 20:41:08] Plate 201904197e read; 384 wells
INFO [2024-07-12 20:41:08] Plate 201904197f read; 384 wells
INFO [2024-07-12 20:41:08] File done
INFO [2024-07-12 20:41:08] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data1/RawData_day0.xlsx, sheet Readout_0077vs0068_day7
INFO [2024-07-12 20:41:09] Plate 201904190a read; 384 wells
INFO [2024-07-12 20:41:09] Plate 201904190b read; 384 wells
INFO [2024-07-12 20:41:09] Plate 201904190c read; 384 wells
INFO [2024-07-12 20:41:09] Plate 201904190d read; 384 wells
INFO [2024-07-12 20:41:09] Plate 201904190e read; 384 wells
INFO [2024-07-12 20:41:09] Plate 201904190f read; 384 wells
INFO [2024-07-12 20:41:09] File done
INFO [2024-07-12 20:41:09] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H2122-2
INFO [2024-07-12 20:41:09] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H358-2
INFO [2024-07-12 20:41:09] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H358-1
INFO [2024-07-12 20:41:10] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H2122-1
INFO [2024-07-12 20:41:10] Reading Template_7daytreated.xlsx with load_templates_xlsx
INFO [2024-07-12 20:41:10] Loading Template_7daytreated.xlsx
INFO [2024-07-12 20:41:10] Loading Template_Untreated.xlsx
INFO [2024-07-12 20:41:10] Templates loaded successfully!
INFO [2024-07-12 20:41:10] Reading Template_7daytreated.xlsx with load_templates_xlsx
INFO [2024-07-12 20:41:10] Loading Template_7daytreated.xlsx
INFO [2024-07-12 20:41:10] Loading Template_Untreated.xlsx
INFO [2024-07-12 20:41:10] Templates loaded successfully!
INFO [2024-07-12 20:41:10] Reading D300_trt_Tecan_96_well_plates.xlsx with load_templates_xlsx
INFO [2024-07-12 20:41:10] Loading D300_trt_Tecan_96_well_plates.xlsx
INFO [2024-07-12 20:41:11] Templates loaded successfully!
INFO [2024-07-12 20:41:11] Reading Template_7daytreated.xlsx with load_templates_xlsx
INFO [2024-07-12 20:41:11] Loading Template_7daytreated.xlsx
INFO [2024-07-12 20:41:11] Templates loaded successfully!
INFO [2024-07-12 20:41:11] Manifest loaded successfully
INFO [2024-07-12 20:41:11] Reading Template_7daytreated.xlsx with load_templates_xlsx
INFO [2024-07-12 20:41:11] Loading Template_7daytreated.xlsx
INFO [2024-07-12 20:41:11] Loading Template_Untreated.xlsx
INFO [2024-07-12 20:41:11] Templates loaded successfully!
INFO [2024-07-12 20:41:11] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data1/RawData_day0.xlsx, sheet Readout_0077vs0068_day7
INFO [2024-07-12 20:41:12] Plate 201904190a read; 384 wells
INFO [2024-07-12 20:41:12] Plate 201904190b read; 384 wells
INFO [2024-07-12 20:41:12] Plate 201904190c read; 384 wells
INFO [2024-07-12 20:41:12] Plate 201904190d read; 384 wells
INFO [2024-07-12 20:41:12] Plate 201904190e read; 384 wells
INFO [2024-07-12 20:41:12] Plate 201904190f read; 384 wells
INFO [2024-07-12 20:41:12] File done
INFO [2024-07-12 20:41:12] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data1/RawData_day7.xlsx, sheet Readout_0077vs0068_day7
INFO [2024-07-12 20:41:12] Plate 201904197a read; 384 wells
INFO [2024-07-12 20:41:12] Plate 201904197b read; 384 wells
INFO [2024-07-12 20:41:12] Plate 201904197c read; 384 wells
INFO [2024-07-12 20:41:12] Plate 201904197d read; 384 wells
INFO [2024-07-12 20:41:12] Plate 201904197e read; 384 wells
INFO [2024-07-12 20:41:12] Plate 201904197f read; 384 wells
INFO [2024-07-12 20:41:12] File done
INFO [2024-07-12 20:41:12] Manifest loaded successfully
INFO [2024-07-12 20:41:12] Reading D300_trt_Tecan_96_well_plates.xlsx with load_templates_xlsx
INFO [2024-07-12 20:41:12] Loading D300_trt_Tecan_96_well_plates.xlsx
INFO [2024-07-12 20:41:12] Templates loaded successfully!
INFO [2024-07-12 20:41:12] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H2122-2
INFO [2024-07-12 20:41:13] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H358-2
INFO [2024-07-12 20:41:13] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H358-1
INFO [2024-07-12 20:41:13] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H2122-1
INFO [2024-07-12 20:41:13] Manifest loaded successfully
INFO [2024-07-12 20:41:13] Reading Project40.treated.template.xlsx with load_templates_xlsx
INFO [2024-07-12 20:41:13] Loading Project40.treated.template.xlsx
INFO [2024-07-12 20:41:13] Loading Project40.untreated.template.xlsx
INFO [2024-07-12 20:41:13] Templates loaded successfully!
INFO [2024-07-12 20:41:13] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H0109269D00.csv, sheet 0
INFO [2024-07-12 20:41:13] Plate H0109269D00 read; 384 wells
INFO [2024-07-12 20:41:13] File done
INFO [2024-07-12 20:41:13] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H0109269D01.csv, sheet 0
INFO [2024-07-12 20:41:13] Plate H0109269D01 read; 384 wells
INFO [2024-07-12 20:41:13] File done
INFO [2024-07-12 20:41:13] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H0309269D00.csv, sheet 0
INFO [2024-07-12 20:41:13] Plate H0309269D00 read; 384 wells
INFO [2024-07-12 20:41:13] File done
INFO [2024-07-12 20:41:13] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H0309269D01.csv, sheet 0
INFO [2024-07-12 20:41:13] Plate H0309269D01 read; 384 wells
INFO [2024-07-12 20:41:13] File done
INFO [2024-07-12 20:41:13] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H0409269D00.csv, sheet 0
INFO [2024-07-12 20:41:13] Plate H0409269D00 read; 384 wells
INFO [2024-07-12 20:41:13] File done
INFO [2024-07-12 20:41:13] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H0409269D01.csv, sheet 0
INFO [2024-07-12 20:41:13] Plate H0409269D01 read; 384 wells
INFO [2024-07-12 20:41:13] File done
INFO [2024-07-12 20:41:13] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H0509269D00.csv, sheet 0
INFO [2024-07-12 20:41:13] Plate H0509269D00 read; 384 wells
INFO [2024-07-12 20:41:13] File done
INFO [2024-07-12 20:41:14] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H0509269D01.csv, sheet 0
INFO [2024-07-12 20:41:14] Plate H0509269D01 read; 384 wells
INFO [2024-07-12 20:41:14] File done
INFO [2024-07-12 20:41:14] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H0609269D00.csv, sheet 0
INFO [2024-07-12 20:41:14] Plate H0609269D00 read; 384 wells
INFO [2024-07-12 20:41:14] File done
INFO [2024-07-12 20:41:14] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H0609269D01.csv, sheet 0
INFO [2024-07-12 20:41:14] Plate H0609269D01 read; 384 wells
INFO [2024-07-12 20:41:14] File done
INFO [2024-07-12 20:41:14] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H0709269D00.csv, sheet 0
INFO [2024-07-12 20:41:14] Plate H0709269D00 read; 384 wells
INFO [2024-07-12 20:41:14] File done
INFO [2024-07-12 20:41:14] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H0709269D01.csv, sheet 0
INFO [2024-07-12 20:41:14] Plate H0709269D01 read; 384 wells
INFO [2024-07-12 20:41:14] File done
INFO [2024-07-12 20:41:14] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H0809269D00.csv, sheet 0
INFO [2024-07-12 20:41:14] Plate H0809269D00 read; 384 wells
INFO [2024-07-12 20:41:14] File done
INFO [2024-07-12 20:41:14] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H0809269D01.csv, sheet 0
INFO [2024-07-12 20:41:14] Plate H0809269D01 read; 384 wells
INFO [2024-07-12 20:41:14] File done
INFO [2024-07-12 20:41:14] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H0909269D00.csv, sheet 0
INFO [2024-07-12 20:41:14] Plate H0909269D00 read; 384 wells
INFO [2024-07-12 20:41:14] File done
INFO [2024-07-12 20:41:14] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H0909269D01.csv, sheet 0
INFO [2024-07-12 20:41:14] Plate H0909269D01 read; 384 wells
INFO [2024-07-12 20:41:14] File done
INFO [2024-07-12 20:41:14] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H1109269D00.csv, sheet 0
INFO [2024-07-12 20:41:14] Plate H1109269D00 read; 384 wells
INFO [2024-07-12 20:41:14] File done
INFO [2024-07-12 20:41:14] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H1109269D01.csv, sheet 0
INFO [2024-07-12 20:41:14] Plate H1109269D01 read; 384 wells
INFO [2024-07-12 20:41:14] File done
INFO [2024-07-12 20:41:14] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H1209269D00.csv, sheet 0
INFO [2024-07-12 20:41:14] Plate H1209269D00 read; 384 wells
INFO [2024-07-12 20:41:14] File done
INFO [2024-07-12 20:41:14] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H1209269D01.csv, sheet 0
INFO [2024-07-12 20:41:14] Plate H1209269D01 read; 384 wells
INFO [2024-07-12 20:41:14] File done
INFO [2024-07-12 20:41:14] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H1409269D00.csv, sheet 0
INFO [2024-07-12 20:41:14] Plate H1409269D00 read; 384 wells
INFO [2024-07-12 20:41:14] File done
INFO [2024-07-12 20:41:14] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H1409269D01.csv, sheet 0
INFO [2024-07-12 20:41:14] Plate H1409269D01 read; 384 wells
INFO [2024-07-12 20:41:14] File done
INFO [2024-07-12 20:41:14] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/K0209269D00.csv, sheet 0
INFO [2024-07-12 20:41:14] Plate K0209269D00 read; 384 wells
INFO [2024-07-12 20:41:14] File done
INFO [2024-07-12 20:41:14] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/K0209269D01.csv, sheet 0
INFO [2024-07-12 20:41:14] Plate K0209269D01 read; 384 wells
INFO [2024-07-12 20:41:14] File done
INFO [2024-07-12 20:41:14] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/K0809269D00.csv, sheet 0
INFO [2024-07-12 20:41:14] Plate K0809269D00 read; 384 wells
INFO [2024-07-12 20:41:14] File done
INFO [2024-07-12 20:41:14] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/K0809269D01.csv, sheet 0
INFO [2024-07-12 20:41:14] Plate K0809269D01 read; 384 wells
INFO [2024-07-12 20:41:14] File done
INFO [2024-07-12 20:41:14] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/K1009269D00.csv, sheet 0
INFO [2024-07-12 20:41:14] Plate K1009269D00 read; 384 wells
INFO [2024-07-12 20:41:14] File done
INFO [2024-07-12 20:41:14] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/K1009269D01.csv, sheet 0
INFO [2024-07-12 20:41:14] Plate K1009269D01 read; 384 wells
INFO [2024-07-12 20:41:14] File done
INFO [2024-07-12 20:41:14] Manifest loaded successfully
INFO [2024-07-12 20:41:14] Reading Template_7daytreated.xlsx with load_templates_xlsx
INFO [2024-07-12 20:41:14] Loading Template_7daytreated.xlsx
INFO [2024-07-12 20:41:14] Loading Template_Untreated.xlsx
INFO [2024-07-12 20:41:15] Templates loaded successfully!
INFO [2024-07-12 20:41:15] Manifest loaded successfully
INFO [2024-07-12 20:41:15] Reading Template_7daytreated.xlsx with load_templates_xlsx
INFO [2024-07-12 20:41:15] Loading Template_7daytreated.xlsx
INFO [2024-07-12 20:41:15] Loading Template_Untreated.xlsx
INFO [2024-07-12 20:41:15] Templates loaded successfully!
INFO [2024-07-12 20:41:15] Manifest loaded successfully
INFO [2024-07-12 20:41:15] Reading Template_trt.tsv with load_templates_tsv
INFO [2024-07-12 20:41:15] Loading Template_trt.tsv
INFO [2024-07-12 20:41:15] Loading Template_untrt.tsv
INFO [2024-07-12 20:41:15] Templates loaded successfully!
INFO [2024-07-12 20:41:15] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data5/RawData.tsv
WARN [2024-07-12 20:41:17] Metadata field names for cannot contain spaces --> corrected to: Gnumber
WARN [2024-07-12 20:41:17] Header Gnumber in corrected to Gnumber
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 141 ]
>
>
> proc.time()
user system elapsed
53.224 3.743 57.828
gDRimport.Rcheck/gDRimport-Ex.timings
| name | user | system | elapsed | |
| check_metadata_names | 0.095 | 0.018 | 0.118 | |
| convert_LEVEL5_prism_to_gDR_input | 0.018 | 0.003 | 0.021 | |
| convert_LEVEL6_prism_to_gDR_input | 0.018 | 0.005 | 0.024 | |
| convert_MAE_to_PSet | 8.544 | 0.331 | 8.948 | |
| convert_pset_to_df | 0.150 | 0.028 | 0.181 | |
| detect_file_format | 0.325 | 0.022 | 0.350 | |
| getPSet | 0.123 | 0.007 | 0.131 | |
| get_exception_data | 0.009 | 0.002 | 0.011 | |
| get_test_D300_data | 0.002 | 0.001 | 0.003 | |
| get_test_EnVision_data | 0.002 | 0.001 | 0.004 | |
| get_test_Tecan_data | 0.002 | 0.000 | 0.003 | |
| get_test_data | 0.003 | 0.000 | 0.003 | |
| get_test_tsv_data | 0.001 | 0.001 | 0.002 | |
| import_D300 | 2.920 | 0.488 | 3.557 | |
| is_readable_v | 0.002 | 0.000 | 0.002 | |
| load_data | 1.461 | 0.096 | 1.577 | |
| load_manifest | 0.049 | 0.004 | 0.053 | |
| load_results | 1.143 | 0.043 | 1.196 | |
| load_templates | 0.255 | 0.038 | 0.295 | |
| manifest_path-method | 0.003 | 0.001 | 0.003 | |
| parse_D300_xml | 1.149 | 0.010 | 1.166 | |
| read_excel_to_dt | 0.025 | 0.012 | 0.039 | |
| result_path-method | 0.002 | 0.001 | 0.003 | |
| setEnvForPSet | 0 | 0 | 0 | |
| standardize_record_values | 0 | 0 | 0 | |
| template_path-method | 0.002 | 0.001 | 0.003 | |