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### Running command:
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### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL flowPeaks
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* installing to library ‘/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library’
* installing *source* package ‘flowPeaks’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I/usr/local/include `gsl-config --cflags` -fpic -g -O2 -Wall -DR_NO_REMAP -c Rpack.cpp -o Rpack.o
Rpack.cpp: In function ‘void Rpack_get_flowpeaks(double*, double*, double*, int*, int*, int*, double*, double*, double*, int*, int*, double*)’:
Rpack.cpp:65:9: error: ‘error’ was not declared in this scope; did you mean ‘perror’?
65 | error("The underlying C++ function has produced errors\n");
| ^~~~~
| perror
Rpack.cpp: In function ‘void Rpack_get_flowpeaks2(double*, double*, double*, int*, int*, int*, double*, double*, int*, double*)’:
Rpack.cpp:77:9: error: ‘error’ was not declared in this scope; did you mean ‘perror’?
77 | error("The underlying C++ function has produced errors\n");
| ^~~~~
| perror
Rpack.cpp: In function ‘void Rpack_kmeans(double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*)’:
Rpack.cpp:90:9: error: ‘error’ was not declared in this scope; did you mean ‘perror’?
90 | error("The underlying C++ function has produced errors\n");
| ^~~~~
| perror
Rpack.cpp: In function ‘void Rpack_kmeans_center(double*, int*, int*, int*, double*, double*, double*, int*, double*, double*)’:
Rpack.cpp:103:9: error: ‘error’ was not declared in this scope; did you mean ‘perror’?
103 | error("The underlying C++ function has produced errors\n");
| ^~~~~
| perror
Rpack.cpp: In function ‘void Rpack_raster_image(double*, int*, int*, int*, double*, int*, int*)’:
Rpack.cpp:117:9: error: ‘error’ was not declared in this scope; did you mean ‘perror’?
117 | error("The underlying C++ function has produced errors\n");
| ^~~~~
| perror
Rpack.cpp: In function ‘void Rpack_voronoi(int*, double*, double*, int*, double*, int*, double*, int*)’:
Rpack.cpp:129:9: error: ‘error’ was not declared in this scope; did you mean ‘perror’?
129 | error("The underlying C++ function has produced errors\n");
| ^~~~~
| perror
Rpack.cpp: In function ‘void Rpack_relevel(int*, int*, int*, int*, int*, int*)’:
Rpack.cpp:141:25: warning: comparison of integer expressions of different signedness: ‘std::map<int, int>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
141 | if(levels.size()<(i+1)){
| ~~~~~~~~~~~~~^~~~~~
Rpack.cpp:142:13: error: ‘error’ was not declared in this scope; did you mean ‘perror’?
142 | error("There are duplicated values in your old level settings\n");
| ^~~~~
| perror
Rpack.cpp:149:13: error: ‘error’ was not declared in this scope; did you mean ‘perror’?
149 | error("The data does not belong to the old levels \n");
| ^~~~~
| perror
Rpack.cpp: In function ‘void Rpack_summarize_cluster(double*, int*, int*, int*, int*, int*, double*, double*, double*)’:
Rpack.cpp:165:9: error: ‘error’ was not declared in this scope; did you mean ‘perror’?
165 | error("The underlying C++ function has produced errors\n");
| ^~~~~
| perror
Rpack.cpp: In function ‘void Rpack_assign_kmeans(double*, int*, int*, double*, int*, int*)’:
Rpack.cpp:181:9: error: ‘error’ was not declared in this scope; did you mean ‘perror’?
181 | error("The underlying C++ function has produced errors\n");
| ^~~~~
| perror
Rpack.cpp: In function ‘void Rpack_assign_flowPeaks(double*, int*, int*, double*, double*, double*, int*, int*, double*, double*, int*)’:
Rpack.cpp:199:9: error: ‘error’ was not declared in this scope; did you mean ‘perror’?
199 | error("The underlying C++ function has produced errors\n");
| ^~~~~
| perror
Rpack.cpp: In function ‘void Rpack_seedplusplus(double*, int*, int*, int*, double*, double*)’:
Rpack.cpp:214:9: error: ‘error’ was not declared in this scope; did you mean ‘perror’?
214 | error("The underlying C++ function has produced errors\n");
| ^~~~~
| perror
make: *** [/home/biocbuild/bbs-3.20-bioc/R/etc/Makeconf:202: Rpack.o] Error 1
ERROR: compilation failed for package ‘flowPeaks’
* removing ‘/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/flowPeaks’
* restoring previous ‘/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/flowPeaks’
