Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-08-21 11:41 -0400 (Wed, 21 Aug 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4703 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4440 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4472 |
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4421 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4414 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 726/2255 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
flowMatch 1.41.0 (landing page) Ariful Azad
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ![]() | ||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK | ![]() | ||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the flowMatch package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/flowMatch.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: flowMatch |
Version: 1.41.0 |
Command: rm -rf flowMatch.buildbin-libdir && mkdir flowMatch.buildbin-libdir && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL --build --library=flowMatch.buildbin-libdir flowMatch_1.41.0.tar.gz |
StartedAt: 2024-08-21 07:16:19 -0400 (Wed, 21 Aug 2024) |
EndedAt: 2024-08-21 07:17:24 -0400 (Wed, 21 Aug 2024) |
EllapsedTime: 65.5 seconds |
RetCode: 0 |
Status: OK |
PackageFile: flowMatch_1.41.0.zip |
PackageFileSize: 4.157 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf flowMatch.buildbin-libdir && mkdir flowMatch.buildbin-libdir && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL --build --library=flowMatch.buildbin-libdir flowMatch_1.41.0.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'flowMatch' ... ** using staged installation ** libs using C++ compiler: 'G__~1.EXE (GCC) 13.2.0' g++ -std=gnu++17 -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BipartiteGraph.cpp -o BipartiteGraph.o g++ -std=gnu++17 -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c MinWghtEdgCoverBipartite.cpp -o MinWghtEdgCoverBipartite.o MinWghtEdgCoverBipartite.cpp: In function 'void update_height(mclust&, std::vector<std::vector<templatePair> >, std::vector<std::vector<BipartiteGraph> >, double)': MinWghtEdgCoverBipartite.cpp:271:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 271 | for(int i=0; i<tree.height.size(); i++) | ~^~~~~~~~~~~~~~~~~~~ MinWghtEdgCoverBipartite.cpp: In function 'void computeDegConsistencyNew(std::vector<std::vector<templatePair> >&, std::vector<std::vector<BipartiteGraph> >&, double, double)': MinWghtEdgCoverBipartite.cpp:487:45: warning: variable 'delta_cx_cy' set but not used [-Wunused-but-set-variable] 487 | int delta_cx_cy = 0; | ^~~~~~~~~~~ MinWghtEdgCoverBipartite.cpp: In function 'classTemplate buildTemplate(std::vector<std::vector<templatePair> >&, double, mclust&)': MinWghtEdgCoverBipartite.cpp:792:54: warning: 'template1' may be used uninitialized [-Wmaybe-uninitialized] 792 | mergeTemplate(templatePairs[template1][template2], template1, template2,mergedTemplate, curIndex+1 ); | ^ MinWghtEdgCoverBipartite.cpp:787:21: note: 'template1' was declared here 787 | int template1, template2; | ^~~~~~~~~ MinWghtEdgCoverBipartite.cpp:792:65: warning: 'template2' may be used uninitialized [-Wmaybe-uninitialized] 792 | mergeTemplate(templatePairs[template1][template2], template1, template2,mergedTemplate, curIndex+1 ); | ^ MinWghtEdgCoverBipartite.cpp:787:32: note: 'template2' was declared here 787 | int template1, template2; | ^~~~~~~~~ g++ -std=gnu++17 -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c flowMatch.cpp -o flowMatch.o flowMatch.cpp: In function 'Rcpp::List computeMEC(Rcpp::NumericMatrix, double)': flowMatch.cpp:43:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<int> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 43 | for(int i=0; i<mec.sCoverVecVec.size(); i++) | ~^~~~~~~~~~~~~~~~~~~~~~~~ flowMatch.cpp:45:31: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 45 | for(int j=0; j<mec.sCoverVecVec[i].size(); j++) | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~ flowMatch.cpp:53:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<int> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 53 | for(int i=0; i<mec.tCoverVecVec.size(); i++) | ~^~~~~~~~~~~~~~~~~~~~~~~~ flowMatch.cpp:55:31: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 55 | for(int j=0; j<mec.tCoverVecVec[i].size(); j++) | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -shared -s -static-libgcc -o flowMatch.dll tmp.def BipartiteGraph.o MinWghtEdgCoverBipartite.o flowMatch.o -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.20-bioc/R/bin/x64 -lR installing to F:/biocbuild/bbs-3.20-bioc/meat/flowMatch.buildbin-libdir/00LOCK-flowMatch/00new/flowMatch/libs/x64 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'flowMatch' as flowMatch_1.41.0.zip * DONE (flowMatch)