Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-08-21 11:41 -0400 (Wed, 21 Aug 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4703 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4440 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4472 |
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4421 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4414 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 722/2255 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
flowDensity 1.39.0 (landing page) Mehrnoush Malek
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | WARNINGS | ![]() | ||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | ![]() | ||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | ![]() | ||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | WARNINGS | OK | ![]() | ||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | WARNINGS | ||||||||||
To the developers/maintainers of the flowDensity package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/flowDensity.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: flowDensity |
Version: 1.39.0 |
Command: F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:flowDensity.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings flowDensity_1.39.0.tar.gz |
StartedAt: 2024-08-21 00:51:47 -0400 (Wed, 21 Aug 2024) |
EndedAt: 2024-08-21 00:53:04 -0400 (Wed, 21 Aug 2024) |
EllapsedTime: 77.1 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: flowDensity.Rcheck |
Warnings: 3 |
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:flowDensity.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings flowDensity_1.39.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'F:/biocbuild/bbs-3.20-bioc/meat/flowDensity.Rcheck' * using R version 4.4.1 (2024-06-14 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * using option '--no-vignettes' * checking for file 'flowDensity/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'flowDensity' version '1.39.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'flowDensity' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... WARNING checkRd: (7) deGate.Rd:126: Invalid email address: <mmalekes@bccrc.ca> checkRd: (7) getPeaks.Rd:55: Invalid email address: <mmalekes@bccrc.ca> checkRd: (7) getflowFrame.Rd:23: Invalid email address: <jtaghiyar@bccrc.ca> checkRd: (7) nmRemove.Rd:37: Invalid email address: <jtaghiyar@bccrc.ca> checkRd: (7) nmRemove.Rd:38: Invalid email address: <mmalekes@bccrc.ca> checkRd: (7) notSubFrame.Rd:41: Invalid email address: <mmalekes@bccrc.ca> checkRd: (7) plotDens.Rd:89: Invalid email address: <mmalekes@bccrc.ca> checkRd: (7) plotDens.Rd:90: Invalid email address: <jtaghiyar@bccrc.ca> * checking Rd metadata ... OK * checking Rd cross-references ... WARNING Missing link or links in Rd file 'deGate.Rd': 'flowDensity' Missing link or links in Rd file 'getPeaks.Rd': 'flowDensity' See section 'Cross-references' in the 'Writing R Extensions' manual. * checking for missing documentation entries ... WARNING Undocumented code objects: 'flowDensity' Undocumented S4 methods: generic 'flowDensity' and siglist 'CellPopulation,ANY,logical' generic 'flowDensity' and siglist 'flowFrame,ANY,logical' All user-level objects in a package (including S4 classes and methods) should have documentation entries. See chapter 'Writing R documentation files' in the 'Writing R Extensions' manual. * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... NOTE Files named as vignettes but with no recognized vignette engine: 'vignettes/flowDensity.Rmd' (Is a VignetteBuilder field missing?) * checking examples ... OK * checking package vignettes ... NOTE Package has 'vignettes' subdirectory but apparently no vignettes. Perhaps the 'VignetteBuilder' information is missing from the DESCRIPTION file? * checking PDF version of manual ... OK * DONE Status: 3 WARNINGs, 2 NOTEs See 'F:/biocbuild/bbs-3.20-bioc/meat/flowDensity.Rcheck/00check.log' for details.
flowDensity.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL flowDensity ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.20-bioc/R/library' * installing *source* package 'flowDensity' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (flowDensity)
flowDensity.Rcheck/flowDensity-Ex.timings
name | user | system | elapsed | |
CellPopulation-class | 0 | 0 | 0 | |
deGate | 0.14 | 0.01 | 0.22 | |
getPeaks | 0.04 | 0.00 | 0.03 | |
getflowFrame | 0.06 | 0.00 | 0.06 | |
nmRemove | 0.17 | 0.05 | 0.22 | |
notSubFrame | 0.05 | 0.03 | 0.08 | |
plotDens | 0.07 | 0.08 | 0.16 | |