Back to Multiple platform build/check report for BioC 3.20:   simplified   long
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This page was generated on 2024-11-07 12:03 -0500 (Thu, 07 Nov 2024).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.1 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4505
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4765
palomino8Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4506
lconwaymacOS 12.7.1 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4539
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.4.1 (2024-06-14) -- "Race for Your Life" 4493
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 622/2289HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
easyreporting 1.18.0  (landing page)
Dario Righelli
Snapshot Date: 2024-11-06 13:40 -0500 (Wed, 06 Nov 2024)
git_url: https://git.bioconductor.org/packages/easyreporting
git_branch: RELEASE_3_20
git_last_commit: 6762dd5
git_last_commit_date: 2024-10-29 10:42:34 -0500 (Tue, 29 Oct 2024)
teran2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  
palomino8Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    OK  


CHECK results for easyreporting on nebbiolo2

To the developers/maintainers of the easyreporting package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/easyreporting.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: easyreporting
Version: 1.18.0
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:easyreporting.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings easyreporting_1.18.0.tar.gz
StartedAt: 2024-11-06 23:12:50 -0500 (Wed, 06 Nov 2024)
EndedAt: 2024-11-06 23:20:42 -0500 (Wed, 06 Nov 2024)
EllapsedTime: 471.3 seconds
RetCode: 0
Status:   OK  
CheckDir: easyreporting.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:easyreporting.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings easyreporting_1.18.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/easyreporting.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
* running under: Ubuntu 24.04.1 LTS
* using session charset: UTF-8
* checking for file ‘easyreporting/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘easyreporting’ version ‘1.18.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
  cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
 OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘easyreporting’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Unknown package ‘link’ in Rd xrefs
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... NOTE
Documented arguments not in \usage in Rd file 'initReportFilename-easyreporting-method.Rd':
  ‘mainTitle’

Documented arguments not in \usage in Rd file 'initReportFilename.Rd':
  ‘mainTitle’

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.20-bioc/meat/easyreporting.Rcheck/00check.log’
for details.


Installation output

easyreporting.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL easyreporting
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.20-bioc/R/site-library’
* installing *source* package ‘easyreporting’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (easyreporting)

Tests output


Example timings

easyreporting.Rcheck/easyreporting-Ex.timings

nameusersystemelapsed
addResource-easyreporting-method0.0080.0010.008
addResource0.0230.0000.023
compile-easyreporting-method000
compile000
easyreporting-class0.0000.0000.001
erGUIVolcano000
getBibliography-easyreporting-method0.0110.0000.011
getBibliography000
getOptionsList-easyreporting-method0.0000.0000.001
getOptionsList000
getReportFilename-easyreporting-method000
getReportFilename000
makeOptionsList000
mkdCodeChunkCommented-easyreporting-method000
mkdCodeChunkCommented000
mkdCodeChunkComplete-easyreporting-method000
mkdCodeChunkComplete000
mkdCodeChunkEnd-easyreporting-method000
mkdCodeChunkEnd000
mkdCodeChunkSt-easyreporting-method000
mkdCodeChunkSt000
mkdCodeChunkTitledCommented-easyreporting-method000
mkdCodeChunkTitledCommented0.0000.0000.001
mkdGeneralMsg-easyreporting-method000
mkdGeneralMsg000
mkdGeneralTitledMsg-easyreporting-method0.0000.0000.001
mkdGeneralTitledMsg000
mkdTitle-easyreporting-method000
mkdTitle000
mkdVariableAssignment-easyreporting-method000
mkdVariableAssignment0.0010.0000.000
setBibliography-easyreporting-method0.0030.0000.003
setBibliography000
setOptionsList-easyreporting-method000
setOptionsList000