Multiple platform build/check report for BioC 3.20 - BUILD results for cfTools on palomino8

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 22.04.3 LTS)	x86_64	4.4.1 (2024-06-14) -- "Race for Your Life"	4703
palomino8	Windows Server 2022 Datacenter	x64	4.4.1 (2024-06-14 ucrt) -- "Race for Your Life"	4440
lconway	macOS 12.7.1 Monterey	x86_64	4.4.1 (2024-06-14) -- "Race for Your Life"	4472
kjohnson3	macOS 13.6.5 Ventura	arm64	4.4.1 (2024-06-14) -- "Race for Your Life"	4420
kunpeng2	Linux (openEuler 22.03 LTS-SP1)	aarch64	4.4.1 (2024-06-14) -- "Race for Your Life"	4413
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for cfTools on palomino8

To the developers/maintainers of the cfTools package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cfTools.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: cfTools

Version: 1.5.0

Command: chmod a+r cfTools -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe --arch x64 CMD build --keep-empty-dirs --no-resave-data cfTools

StartedAt: 2024-08-14 17:30:07 -0400 (Wed, 14 Aug 2024)

EndedAt: 2024-08-14 17:34:30 -0400 (Wed, 14 Aug 2024)

EllapsedTime: 263.3 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r cfTools -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe --arch x64 CMD build --keep-empty-dirs --no-resave-data cfTools
###
##############################################################################
##############################################################################


* checking for file 'cfTools/DESCRIPTION' ... OK
* preparing 'cfTools':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'cfTools-vignette.Rmd' using rmarkdown
Channels:
 - conda-forge
Platform: win-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: C:\Users\biocbuild\.basilisk\1.17.2\cfTools\1.5.0\new_env

  added / updated specs:
    - python=3.8


The following NEW packages will be INSTALLED:

  bzip2              conda-forge/win-64::bzip2-1.0.8-h2466b09_7 
  ca-certificates    conda-forge/win-64::ca-certificates-2024.7.4-h56e8100_0 
  libffi             conda-forge/win-64::libffi-3.4.2-h8ffe710_5 
  libsqlite          conda-forge/win-64::libsqlite-3.46.0-h2466b09_0 
  libzlib            conda-forge/win-64::libzlib-1.3.1-h2466b09_1 
  openssl            conda-forge/win-64::openssl-3.3.1-h2466b09_2 
  pip                conda-forge/noarch::pip-24.2-pyhd8ed1ab_0 
  python             conda-forge/win-64::python-3.8.19-h4de0772_0_cpython 
  setuptools         conda-forge/noarch::setuptools-72.1.0-pyhd8ed1ab_0 
  tk                 conda-forge/win-64::tk-8.6.13-h5226925_1 
  ucrt               conda-forge/win-64::ucrt-10.0.22621.0-h57928b3_0 
  vc                 conda-forge/win-64::vc-14.3-h8a93ad2_20 
  vc14_runtime       conda-forge/win-64::vc14_runtime-14.40.33810-ha82c5b3_20 
  vs2015_runtime     conda-forge/win-64::vs2015_runtime-14.40.33810-h3bf8584_20 
  wheel              conda-forge/noarch::wheel-0.44.0-pyhd8ed1ab_0 
  xz                 conda-forge/win-64::xz-5.2.6-h8d14728_0 


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
 - conda-forge
Platform: win-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
    current version: 24.3.0
    latest version: 24.7.1

Please update conda by running

    $ conda update -n base -c conda-forge conda



# All requested packages already installed.

Channels:
 - conda-forge
Platform: win-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... 
Quitting from lines 165-167 [unnamed-chunk-3] (cfTools-vignette.Rmd)
Error: processing vignette 'cfTools-vignette.Rmd' failed with diagnostics:
one or more Python packages failed to install [error code 5]
--- failed re-building 'cfTools-vignette.Rmd'

SUMMARY: processing the following file failed:
  'cfTools-vignette.Rmd'

Error: Vignette re-building failed.
Execution halted