Back to Multiple platform build/check report for BioC 3.20:   simplified   long
AB[C]DEFGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2024-06-11 15:40 -0400 (Tue, 11 Jun 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" 4679
palomino4Windows Server 2022 Datacenterx644.4.0 RC (2024-04-16 r86468 ucrt) -- "Puppy Cup" 4414
merida1macOS 12.7.4 Montereyx86_644.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" 4441
kjohnson1macOS 13.6.6 Venturaarm644.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" 4394
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 265/2239HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
cancerclass 1.49.0  (landing page)
Daniel Kosztyla
Snapshot Date: 2024-06-09 14:00 -0400 (Sun, 09 Jun 2024)
git_url: https://git.bioconductor.org/packages/cancerclass
git_branch: devel
git_last_commit: e945e63
git_last_commit_date: 2024-04-30 10:27:46 -0400 (Tue, 30 Apr 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.4 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published


BUILD BIN results for cancerclass on palomino4

To the developers/maintainers of the cancerclass package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cancerclass.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: cancerclass
Version: 1.49.0
Command: rm -rf cancerclass.buildbin-libdir && mkdir cancerclass.buildbin-libdir && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL --build --library=cancerclass.buildbin-libdir cancerclass_1.49.0.tar.gz
StartedAt: 2024-06-10 13:04:16 -0400 (Mon, 10 Jun 2024)
EndedAt: 2024-06-10 13:05:00 -0400 (Mon, 10 Jun 2024)
EllapsedTime: 44.3 seconds
RetCode: 0
Status:   OK  
PackageFile: cancerclass_1.49.0.zip
PackageFileSize: 1.522 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf cancerclass.buildbin-libdir && mkdir cancerclass.buildbin-libdir && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL --build --library=cancerclass.buildbin-libdir cancerclass_1.49.0.tar.gz
###
##############################################################################
##############################################################################


* installing *source* package 'cancerclass' ...
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 13.2.0'
gcc  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c copa.c -o copa.o
gcc  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c cor.c -o cor.o
gcc  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c fc.c -o fc.o
gcc  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c help.c -o help.o
help.c: In function 'welch_df':
help.c:263:19: warning: variable 'mean2' set but not used [-Wunused-but-set-variable]
  263 |     double mean1, mean2, var1, var2 = 0.0;
      |                   ^~~~~
help.c:263:12: warning: variable 'mean1' set but not used [-Wunused-but-set-variable]
  263 |     double mean1, mean2, var1, var2 = 0.0;
      |            ^~~~~
help.c: In function 'bsortdesc':
help.c:344:13: warning: variable 'anzahl' set but not used [-Wunused-but-set-variable]
  344 |     int i,k,anzahl=0;
      |             ^~~~~~
help.c: In function 'bsort':
help.c:368:13: warning: variable 'anzahl' set but not used [-Wunused-but-set-variable]
  368 |     int i,k,anzahl=0;
      |             ^~~~~~
gcc  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c ort.c -o ort.o
gcc  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c os.c -o os.o
gcc  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c shift.c -o shift.o
gcc  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c statistics.c -o statistics.o
gcc  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c student.c -o student.o
gcc  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c throw.c -o throw.o
gcc  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c welch.c -o welch.o
gcc  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c wilcox.c -o wilcox.o
wilcox.c: In function 'wilcoxon':
wilcox.c:37:8: warning: variable 'overall' set but not used [-Wunused-but-set-variable]
   37 |    int overall = 0;
      |        ^~~~~~~
wilcox.c: In function 'pwilcoxon':
wilcox.c:75:8: warning: variable 'overall' set but not used [-Wunused-but-set-variable]
   75 |    int overall = 0;
      |        ^~~~~~~
gcc -shared -s -static-libgcc -o cancerclass.dll tmp.def copa.o cor.o fc.o help.o ort.o os.o shift.o statistics.o student.o throw.o welch.o wilcox.o -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.20-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.20-bioc/meat/cancerclass.buildbin-libdir/00LOCK-cancerclass/00new/cancerclass/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'cancerclass' as cancerclass_1.49.0.zip
* DONE (cancerclass)