Back to Multiple platform build/check report for BioC 3.20:   simplified   long
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This page was generated on 2024-07-18 11:39 -0400 (Thu, 18 Jul 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4683
palomino8Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4379
lconwaymacOS 12.7.1 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4450
kjohnson3macOS 13.6.5 Venturaarm644.4.1 (2024-06-14) -- "Race for Your Life" 4399
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 202/2248HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
biodbHmdb 1.11.0  (landing page)
Pierrick Roger
Snapshot Date: 2024-07-17 14:00 -0400 (Wed, 17 Jul 2024)
git_url: https://git.bioconductor.org/packages/biodbHmdb
git_branch: devel
git_last_commit: c3d59a4
git_last_commit_date: 2024-04-30 11:39:05 -0400 (Tue, 30 Apr 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino8Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.6.5 Ventura / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

CHECK results for biodbHmdb on palomino8

To the developers/maintainers of the biodbHmdb package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbHmdb.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: biodbHmdb
Version: 1.11.0
Command: F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:biodbHmdb.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings biodbHmdb_1.11.0.tar.gz
StartedAt: 2024-07-17 23:09:03 -0400 (Wed, 17 Jul 2024)
EndedAt: 2024-07-17 23:10:28 -0400 (Wed, 17 Jul 2024)
EllapsedTime: 85.8 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: biodbHmdb.Rcheck
Warnings: 2

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:biodbHmdb.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings biodbHmdb_1.11.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'F:/biocbuild/bbs-3.20-bioc/meat/biodbHmdb.Rcheck'
* using R version 4.4.1 (2024-06-14 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'biodbHmdb/DESCRIPTION' ... OK
* this is package 'biodbHmdb' version '1.11.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'biodbHmdb' can be installed ... WARNING
Found the following significant warnings:
  EntryMaker.hpp:23:21: warning: 'EntryMaker::accession_tag' will be initialized after [-Wreorder]
  EntryMaker.hpp:22:14: warning:   'bool EntryMaker::closed' [-Wreorder]
  EntryMaker.cpp:5:1: warning:   when initialized here [-Wreorder]
See 'F:/biocbuild/bbs-3.20-bioc/meat/biodbHmdb.Rcheck/00install.out' for details.
* used C++ compiler: 'G__~1.EXE (GCC) 13.2.0'
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: 'zip'
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  'HmdbMetabolitesConn' 'HmdbMetabolitesEntry' 'hmdbToSqlite'
All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files for x64 is not available
File 'F:/biocbuild/bbs-3.20-bioc/R/library/biodbHmdb/libs/x64/biodbHmdb.dll':
  Found '_exit', possibly from '_exit' (C)
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
  Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf. The detected symbols are linked into
the code but might come from libraries and not actually be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking files in 'vignettes' ... OK
* checking examples ... NONE
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 WARNINGs, 2 NOTEs
See
  'F:/biocbuild/bbs-3.20-bioc/meat/biodbHmdb.Rcheck/00check.log'
for details.

Installation output

biodbHmdb.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL biodbHmdb
###
##############################################################################
##############################################################################


* installing to library 'F:/biocbuild/bbs-3.20-bioc/R/library'
* installing *source* package 'biodbHmdb' ...
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 13.2.0'
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.20-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c EntryMaker.cpp -o EntryMaker.o
In file included from EntryMaker.cpp:1:
EntryMaker.hpp: In constructor 'EntryMaker::EntryMaker()':
EntryMaker.hpp:23:21: warning: 'EntryMaker::accession_tag' will be initialized after [-Wreorder]
   23 |         TagDetector accession_tag;
      |                     ^~~~~~~~~~~~~
EntryMaker.hpp:22:14: warning:   'bool EntryMaker::closed' [-Wreorder]
   22 |         bool closed;
      |              ^~~~~~
EntryMaker.cpp:5:1: warning:   when initialized here [-Wreorder]
    5 | EntryMaker::EntryMaker() :
      | ^~~~~~~~~~
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.20-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c FileEntryMaker.cpp -o FileEntryMaker.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.20-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.20-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c StringEnrtryMaker.cpp -o StringEnrtryMaker.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.20-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c TagDetector.cpp -o TagDetector.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.20-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c XmlSplitter.cpp -o XmlSplitter.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.20-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c extractXmlEntries.cpp -o extractXmlEntries.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.20-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c test-100-TagDetector.cpp -o test-100-TagDetector.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.20-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c test-150-StringEntryMaker.cpp -o test-150-StringEntryMaker.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.20-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c test-200-XmlSplitter.cpp -o test-200-XmlSplitter.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.20-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c test-runner.cpp -o test-runner.o
g++ -std=gnu++17 -shared -s -static-libgcc -o biodbHmdb.dll tmp.def EntryMaker.o FileEntryMaker.o RcppExports.o StringEnrtryMaker.o TagDetector.o XmlSplitter.o extractXmlEntries.o test-100-TagDetector.o test-150-StringEntryMaker.o test-200-XmlSplitter.o test-runner.o -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.20-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.20-bioc/R/library/00LOCK-biodbHmdb/00new/biodbHmdb/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
No man pages found in package  'biodbHmdb' 
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbHmdb)

Tests output

biodbHmdb.Rcheck/tests/testthat.Rout


R version 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbHmdb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbHmdb")
biodb.INFO [2024-07-17 23:10:09.965][biodb::testContext]
biodb.INFO [2024-07-17 23:10:09.968][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-17 23:10:09.970][biodb::testContext] Test context - Tests of independent functions
biodb.INFO [2024-07-17 23:10:09.971][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-17 23:10:09.973][biodb::testContext]
biodb.INFO [2024-07-17 23:10:09.976][biodb::testThat]
biodb.INFO [2024-07-17 23:10:09.978][biodb::testThat] Running test function  test_extractXmlEntries  (" extractXmlEntries() works fine. ").
biodb.INFO [2024-07-17 23:10:09.980][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-17 23:10:09.982][biodb::testThat]
biodb.INFO [2024-07-17 23:10:10.196][biodb::testContext]
biodb.INFO [2024-07-17 23:10:10.198][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-17 23:10:10.200][biodb::testContext] Test context - Generic tests
biodb.INFO [2024-07-17 23:10:10.202][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-17 23:10:10.204][biodb::testContext]
biodb.INFO [2024-07-17 23:10:10.219][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.13.0.
biodb.DEBUG[2024-07-17 23:10:10.234][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-07-17 23:10:10.242][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-17 23:10:10.244][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-07-17 23:10:10.246][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-07-17 23:10:10.247][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:10.248][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:10.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:10.251][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-07-17 23:10:10.268][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-07-17 23:10:10.269][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:10.270][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:10.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:10.273][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-07-17 23:10:10.274][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-07-17 23:10:10.275][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:10.277][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:10.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:10.279][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-07-17 23:10:10.280][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-07-17 23:10:10.281][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-07-17 23:10:10.282][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:10.284][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:10.285][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:10.286][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-07-17 23:10:10.287][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-07-17 23:10:10.288][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-07-17 23:10:10.289][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:10.291][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:10.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:10.293][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-07-17 23:10:10.294][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-07-17 23:10:10.295][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:10.296][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:10.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:10.299][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-07-17 23:10:10.301][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-07-17 23:10:10.302][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-07-17 23:10:10.304][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:10.305][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:10.306][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:10.308][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-07-17 23:10:10.309][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-07-17 23:10:10.310][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:10.312][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:10.313][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:10.314][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-07-17 23:10:10.316][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-07-17 23:10:10.318][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-07-17 23:10:10.320][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:10.322][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:10.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:10.326][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-07-17 23:10:10.328][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-07-17 23:10:10.330][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-07-17 23:10:10.332][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-07-17 23:10:10.333][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-07-17 23:10:10.335][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-07-17 23:10:10.336][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:10.337][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:10.338][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:10.340][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-07-17 23:10:10.341][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-07-17 23:10:10.342][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:10.344][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:10.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:10.346][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-07-17 23:10:10.347][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-07-17 23:10:10.348][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:10.349][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:10.351][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:10.352][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-07-17 23:10:10.353][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-07-17 23:10:10.354][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:10.355][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:10.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:10.358][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-07-17 23:10:10.359][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-07-17 23:10:10.360][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:10.361][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:10.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:10.364][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-07-17 23:10:10.366][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-07-17 23:10:10.368][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:10.370][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:10.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:10.373][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-07-17 23:10:10.375][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-07-17 23:10:10.380][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-07-17 23:10:10.382][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:10.383][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:10.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:10.387][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-07-17 23:10:10.388][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-07-17 23:10:10.390][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-07-17 23:10:10.392][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:10.393][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:10.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:10.399][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-07-17 23:10:10.435][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-17 23:10:10.459][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-07-17 23:10:10.462][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-17 23:10:10.473][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-17 23:10:10.476][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-17 23:10:10.478][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-17 23:10:10.480][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-17 23:10:10.482][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-17 23:10:10.484][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-17 23:10:10.487][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-17 23:10:10.489][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-17 23:10:10.491][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-07-17 23:10:10.493][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-17 23:10:10.495][self$setPropertyValue]
biodb.DEBUG[2024-07-17 23:10:10.498][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-17 23:10:10.500][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-17 23:10:10.500][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-17 23:10:10.500][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-17 23:10:10.500][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-17 23:10:10.500][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-17 23:10:10.502][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-17 23:10:10.505][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-17 23:10:10.507][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-17 23:10:10.509][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-17 23:10:10.511][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-17 23:10:10.513][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-17 23:10:10.516][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-17 23:10:10.518][self$setPropertyValue]
biodb.DEBUG[2024-07-17 23:10:10.520][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-17 23:10:10.522][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-17 23:10:10.525][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-17 23:10:10.527][self$setPropertyValue]
biodb.DEBUG[2024-07-17 23:10:10.529][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-07-17 23:10:10.532][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-17 23:10:10.534][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-07-17 23:10:10.536][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-17 23:10:10.538][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-17 23:10:10.540][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-17 23:10:10.542][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-17 23:10:10.544][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-17 23:10:10.545][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-17 23:10:10.547][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-17 23:10:10.549][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-17 23:10:10.551][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-17 23:10:10.553][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-07-17 23:10:10.555][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-17 23:10:10.557][self$setPropertyValue]
biodb.DEBUG[2024-07-17 23:10:10.559][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-17 23:10:10.561][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-17 23:10:10.561][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-17 23:10:10.561][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-17 23:10:10.561][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-17 23:10:10.561][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-17 23:10:10.563][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-17 23:10:10.565][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-17 23:10:10.566][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-17 23:10:10.568][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-17 23:10:10.570][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-17 23:10:10.572][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-17 23:10:10.574][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-17 23:10:10.576][self$setPropertyValue]
biodb.DEBUG[2024-07-17 23:10:10.578][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-17 23:10:10.579][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-17 23:10:10.581][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-17 23:10:10.583][self$setPropertyValue]
biodb.DEBUG[2024-07-17 23:10:10.584][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-07-17 23:10:10.586][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-17 23:10:10.587][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-07-17 23:10:10.588][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-17 23:10:10.590][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-17 23:10:10.591][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-17 23:10:10.592][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-17 23:10:10.593][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-17 23:10:10.595][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-17 23:10:10.596][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-17 23:10:10.597][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-17 23:10:10.599][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-17 23:10:10.600][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-07-17 23:10:10.601][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-17 23:10:10.602][self$setPropertyValue]
biodb.DEBUG[2024-07-17 23:10:10.604][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-17 23:10:10.605][self$setPropertyValue]
biodb.DEBUG[2024-07-17 23:10:10.606][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-17 23:10:10.607][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-17 23:10:10.608][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-17 23:10:10.610][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-17 23:10:10.611][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-17 23:10:10.612][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-17 23:10:10.613][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-17 23:10:10.614][self$setPropertyValue]
biodb.DEBUG[2024-07-17 23:10:10.616][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-17 23:10:10.617][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-17 23:10:10.618][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-17 23:10:10.619][self$setPropertyValue]
biodb.DEBUG[2024-07-17 23:10:10.621][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-07-17 23:10:10.623][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-17 23:10:10.624][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-07-17 23:10:10.625][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-17 23:10:10.627][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-17 23:10:10.628][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-17 23:10:10.630][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-17 23:10:10.631][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-17 23:10:10.632][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-17 23:10:10.633][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-17 23:10:10.634][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-17 23:10:10.636][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-17 23:10:10.637][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-07-17 23:10:10.638][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-17 23:10:10.640][self$setPropertyValue]
biodb.DEBUG[2024-07-17 23:10:10.641][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-17 23:10:10.642][self$setPropertyValue]
biodb.DEBUG[2024-07-17 23:10:10.643][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-17 23:10:10.644][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-17 23:10:10.646][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-17 23:10:10.647][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-17 23:10:10.648][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-17 23:10:10.650][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-17 23:10:10.651][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-17 23:10:10.652][self$setPropertyValue]
biodb.DEBUG[2024-07-17 23:10:10.653][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-17 23:10:10.654][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-17 23:10:10.656][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-17 23:10:10.657][self$setPropertyValue]
biodb.DEBUG[2024-07-17 23:10:10.661][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-17 23:10:10.662][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:10.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:10.664][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:10.665][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:10.666][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:10.668][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:10.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:10.670][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:10.671][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:10.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:10.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:10.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:10.676][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:10.677][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:10.678][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:10.680][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:10.681][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:10.682][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:10.683][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:10.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:10.687][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:10.688][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:10.690][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:10.692][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:10.694][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:10.696][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:10.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:10.699][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:10.701][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:10.703][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:10.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:10.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:10.709][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:10.710][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:10.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:10.713][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:10.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:10.715][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:10.716][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:10.717][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:10.718][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:10.720][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:10.721][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:10.722][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:10.723][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:10.724][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:10.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:10.727][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:10.728][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:10.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:10.730][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:10.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:10.732][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:10.733][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:10.735][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:10.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:10.737][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:10.738][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:10.739][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:10.740][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:10.741][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:10.743][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:10.744][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:10.745][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:10.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:10.753][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:10.754][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:10.755][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:10.756][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:10.757][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:10.759][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:10.760][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:10.761][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:10.762][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:10.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:10.764][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:10.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:10.766][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:10.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:10.769][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:10.770][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:10.771][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:10.772][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:10.773][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:10.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:10.775][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:10.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:10.778][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-07-17 23:10:10.782][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-07-17 23:10:10.784][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-07-17 23:10:10.786][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-07-17 23:10:10.789][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-17 23:10:10.792][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-07-17 23:10:10.795][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-07-17 23:10:10.797][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-07-17 23:10:10.800][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-07-17 23:10:10.802][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-07-17 23:10:10.805][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-17 23:10:10.808][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-07-17 23:10:10.810][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-07-17 23:10:10.813][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-07-17 23:10:10.816][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-07-17 23:10:10.818][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-17 23:10:10.821][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-07-17 23:10:10.823][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-07-17 23:10:10.825][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-17 23:10:10.828][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-07-17 23:10:10.830][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-07-17 23:10:10.833][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-07-17 23:10:10.835][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-07-17 23:10:10.838][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-07-17 23:10:10.841][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-07-17 23:10:10.844][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-07-17 23:10:10.846][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-07-17 23:10:10.849][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-07-17 23:10:10.851][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-07-17 23:10:10.854][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-07-17 23:10:10.857][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-07-17 23:10:10.859][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-07-17 23:10:10.862][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-07-17 23:10:10.864][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-07-17 23:10:10.865][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-07-17 23:10:10.867][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-07-17 23:10:10.868][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-07-17 23:10:10.870][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-07-17 23:10:10.872][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-07-17 23:10:10.873][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-07-17 23:10:10.875][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-07-17 23:10:10.876][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-07-17 23:10:10.878][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-07-17 23:10:10.880][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-07-17 23:10:10.881][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-07-17 23:10:10.883][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-07-17 23:10:10.884][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-07-17 23:10:10.886][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-07-17 23:10:10.887][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-07-17 23:10:10.889][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-07-17 23:10:10.891][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-07-17 23:10:10.892][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-07-17 23:10:10.894][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-07-17 23:10:10.896][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-07-17 23:10:10.897][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-07-17 23:10:10.899][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-07-17 23:10:10.900][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-07-17 23:10:10.902][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-07-17 23:10:10.903][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-07-17 23:10:10.905][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-07-17 23:10:10.907][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-07-17 23:10:10.908][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-07-17 23:10:10.910][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-07-17 23:10:10.911][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-07-17 23:10:10.913][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-07-17 23:10:10.914][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-07-17 23:10:10.916][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-17 23:10:10.918][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-17 23:10:10.919][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-07-17 23:10:10.921][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-07-17 23:10:10.922][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-07-17 23:10:10.924][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-07-17 23:10:10.926][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-07-17 23:10:10.927][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-07-17 23:10:10.929][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-07-17 23:10:10.931][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-07-17 23:10:10.932][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-07-17 23:10:10.934][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-07-17 23:10:10.935][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-07-17 23:10:10.937][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-07-17 23:10:10.938][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-07-17 23:10:10.940][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-07-17 23:10:10.942][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-07-17 23:10:10.981][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-07-17 23:10:10.984][initialize] This is biodb version 1.13.0.
biodb.DEBUG[2024-07-17 23:10:10.988][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-17 23:10:10.989][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:10.990][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:10.991][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:10.992][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:10.997][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:10.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:10.999][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:11.000][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:11.001][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:11.002][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:11.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:11.005][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:11.006][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:11.007][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:11.009][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:11.010][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:11.045][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:11.048][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:11.050][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:11.052][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:11.054][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:11.056][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:11.058][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:11.060][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:11.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:11.064][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:11.066][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:11.068][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:11.070][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:11.072][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:11.074][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:11.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:11.078][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:11.080][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:11.081][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:11.083][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:11.085][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:11.087][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:11.089][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:11.091][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:11.093][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:11.094][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:11.096][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:11.098][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:11.100][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:11.101][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:11.103][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:11.105][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:11.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:11.109][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:11.111][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:11.113][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:11.114][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:11.116][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:11.118][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:11.120][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:11.121][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:11.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:11.125][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:11.127][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:11.129][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:11.131][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:11.132][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:11.134][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:11.136][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:11.137][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:11.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:11.141][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:11.143][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:11.144][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:11.146][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:11.147][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:11.148][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:11.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:11.151][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:11.152][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:11.153][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:11.154][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:11.156][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:11.157][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:11.158][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:11.159][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:11.161][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:11.163][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:11.165][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:11.167][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:11.168][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:11.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:11.172][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:11.174][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:11.175][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:11.177][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:11.178][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:11.179][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:11.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:11.181][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:11.182][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:11.183][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:11.185][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:11.186][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:11.187][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:11.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:11.190][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:11.191][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:11.193][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:11.195][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:11.197][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:11.199][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:11.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:11.201][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:11.202][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:11.204][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:11.205][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:11.206][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:11.207][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:11.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:11.209][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:11.210][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:11.211][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:11.212][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:11.214][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:11.216][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:11.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:11.221][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-07-17 23:10:11.247][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-07-17 23:10:11.250][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-17 23:10:11.251][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-07-17 23:10:11.252][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-17 23:10:11.254][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-17 23:10:11.255][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-07-17 23:10:11.256][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-07-17 23:10:11.258][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-07-17 23:10:11.259][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-17 23:10:11.260][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-07-17 23:10:11.261][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-17 23:10:11.263][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-17 23:10:11.264][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-07-17 23:10:11.265][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-17 23:10:11.267][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-07-17 23:10:11.267][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-07-17 23:10:11.267][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-07-17 23:10:11.267][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-07-17 23:10:11.267][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-07-17 23:10:11.267][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-07-17 23:10:11.267][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-07-17 23:10:11.267][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-07-17 23:10:11.267][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-07-17 23:10:11.267][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-07-17 23:10:11.267][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-07-17 23:10:11.267][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-07-17 23:10:11.267][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-07-17 23:10:11.267][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-07-17 23:10:11.267][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-07-17 23:10:11.267][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-07-17 23:10:11.267][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-07-17 23:10:11.267][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-07-17 23:10:11.268][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-07-17 23:10:11.269][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-17 23:10:11.269][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-07-17 23:10:11.269][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-07-17 23:10:11.271][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-07-17 23:10:11.272][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-17 23:10:11.273][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-17 23:10:11.274][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-17 23:10:11.275][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-17 23:10:11.276][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-17 23:10:11.278][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-17 23:10:11.279][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-07-17 23:10:11.279][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-07-17 23:10:11.280][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-17 23:10:11.281][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-17 23:10:11.282][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-07-17 23:10:11.284][self$setPropertyValue]
biodb.DEBUG[2024-07-17 23:10:11.289][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-07-17 23:10:11.291][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-07-17 23:10:11.293][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-07-17 23:10:11.295][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-17 23:10:11.296][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-17 23:10:11.329][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-07-17 23:10:11.332][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-07-17 23:10:11.348][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-07-17 23:10:11.355][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-07-17 23:10:11.362][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-17 23:10:11.364][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-17 23:10:11.367][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-07-17 23:10:11.369][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-07-17 23:10:11.372][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-07-17 23:10:11.372][self$setPropertyValue] Setting property "urls" to "F:/biocbuild/bbs-3.20-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-07-17 23:10:11.374][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-17 23:10:11.376][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-17 23:10:11.378][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-07-17 23:10:11.380][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-07-17 23:10:11.382][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-07-17 23:10:11.412][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-07-17 23:10:11.413][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-17 23:10:11.415][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-17 23:10:11.417][private$addConnectorRules] Create new rule for URL "F:/biocbuild/bbs-3.20-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-07-17 23:10:11.418][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-17 23:10:11.420][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-07-17 23:10:11.430][biodb::testThat]
biodb.INFO [2024-07-17 23:10:11.431][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-07-17 23:10:11.432][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-17 23:10:11.433][biodb::testThat]
biodb.TRACE[2024-07-17 23:10:11.462][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc/R/library/biodbHmdb/testref/entry-hmdb.metabolites-HMDB0000001-content.xml".
biodb.DEBUG[2024-07-17 23:10:11.464][biodb$getFactory()$createEntryFromCo ...] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-07-17 23:10:11.468][biodb$getFactory()$createEntryFromCo ...] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-07-17 23:10:11.477][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-17 23:10:11.480][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:11.482][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:11.502][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:11.503][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:11.505][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:11.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-17 23:10:11.649][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:11.651][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:11.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:11.653][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:11.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:11.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:11.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:11.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:11.672][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:11.674][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:11.675][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:11.677][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:11.707][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:11.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:11.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:11.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:11.714][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-17 23:10:11.716][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-17 23:10:11.718][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:11.720][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:11.722][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-17 23:10:11.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-17 23:10:11.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:11.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:11.727][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-17 23:10:11.728][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-17 23:10:11.730][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:11.731][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:11.733][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-17 23:10:11.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-17 23:10:11.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:11.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:11.746][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-17 23:10:11.748][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-17 23:10:11.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:11.750][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:11.752][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-17 23:10:11.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-17 23:10:11.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:11.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:11.757][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-17 23:10:11.758][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-17 23:10:11.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:11.761][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:11.763][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-17 23:10:11.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-17 23:10:11.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:11.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:11.768][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-17 23:10:11.769][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-17 23:10:11.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:11.772][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:11.773][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-17 23:10:11.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-17 23:10:11.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:11.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:11.778][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-17 23:10:11.780][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-17 23:10:11.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:11.782][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:11.784][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-17 23:10:11.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-17 23:10:11.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:11.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:11.789][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-17 23:10:11.790][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-17 23:10:11.791][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:11.792][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:11.794][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-17 23:10:11.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-17 23:10:11.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:11.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:11.799][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-17 23:10:11.801][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-17 23:10:11.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:11.803][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:11.805][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-17 23:10:11.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-17 23:10:11.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:11.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:11.810][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-17 23:10:11.811][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-17 23:10:11.813][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:11.814][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:11.816][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-17 23:10:11.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-17 23:10:11.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:11.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:11.821][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-17 23:10:11.822][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-17 23:10:11.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:11.825][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:11.826][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-17 23:10:11.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-17 23:10:11.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:11.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:11.832][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-17 23:10:11.833][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-17 23:10:11.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:11.835][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:11.837][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-17 23:10:11.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-17 23:10:11.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:11.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:11.842][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-17 23:10:11.844][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-17 23:10:11.845][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:11.846][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:11.848][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-17 23:10:11.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-17 23:10:11.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:11.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:11.855][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:11.857][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:11.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:11.859][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:11.861][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:11.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:11.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:11.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:11.868][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:11.871][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:11.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:11.874][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:11.877][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:11.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:11.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:11.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:11.885][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-17 23:10:11.887][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-17 23:10:11.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:11.891][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:11.894][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-17 23:10:11.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-17 23:10:11.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:11.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:11.902][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-07-17 23:10:11.904][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-17 23:10:11.906][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:11.908][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:11.911][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-07-17 23:10:11.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-17 23:10:11.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:11.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:11.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:11.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:11.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:11.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:11.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:11.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:11.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:11.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:11.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:11.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:11.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:11.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.003][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-17 23:10:12.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-17 23:10:12.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.012][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-17 23:10:12.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-17 23:10:12.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.019][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-17 23:10:12.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-17 23:10:12.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.027][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-17 23:10:12.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-17 23:10:12.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.034][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-17 23:10:12.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-17 23:10:12.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.041][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-17 23:10:12.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-17 23:10:12.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-17 23:10:12.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-17 23:10:12.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.051][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-17 23:10:12.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-17 23:10:12.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.056][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-17 23:10:12.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-17 23:10:12.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.061][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-17 23:10:12.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-17 23:10:12.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.066][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-17 23:10:12.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-17 23:10:12.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.071][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-17 23:10:12.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-17 23:10:12.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.076][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-17 23:10:12.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-17 23:10:12.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.081][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-17 23:10:12.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-17 23:10:12.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.086][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-17 23:10:12.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-17 23:10:12.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.092][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-17 23:10:12.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-17 23:10:12.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.097][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-17 23:10:12.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-17 23:10:12.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.104][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-17 23:10:12.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-17 23:10:12.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.112][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-17 23:10:12.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-17 23:10:12.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.119][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-17 23:10:12.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-17 23:10:12.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.127][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-17 23:10:12.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-17 23:10:12.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.134][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:12.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:12.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.142][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:12.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:12.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.149][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:12.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:12.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.157][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-17 23:10:12.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-17 23:10:12.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.164][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-17 23:10:12.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-17 23:10:12.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.172][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-17 23:10:12.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-17 23:10:12.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.179][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-17 23:10:12.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-17 23:10:12.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.194][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-17 23:10:12.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-17 23:10:12.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.200][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-17 23:10:12.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-17 23:10:12.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.205][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-17 23:10:12.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-17 23:10:12.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.210][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-17 23:10:12.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-17 23:10:12.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.215][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-17 23:10:12.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-17 23:10:12.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.220][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-17 23:10:12.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-17 23:10:12.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.225][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-17 23:10:12.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-17 23:10:12.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.230][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-17 23:10:12.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-17 23:10:12.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.235][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-17 23:10:12.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-17 23:10:12.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.242][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-17 23:10:12.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-17 23:10:12.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.250][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-17 23:10:12.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-17 23:10:12.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.258][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:12.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:12.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.265][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:12.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:12.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.273][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:12.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:12.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.281][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-17 23:10:12.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-17 23:10:12.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.289][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-17 23:10:12.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-17 23:10:12.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.297][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-17 23:10:12.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-17 23:10:12.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.305][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:12.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:12.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.313][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:12.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:12.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.321][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:12.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:12.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.329][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-17 23:10:12.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-17 23:10:12.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.338][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-17 23:10:12.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-17 23:10:12.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.346][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-17 23:10:12.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-17 23:10:12.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.354][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-07-17 23:10:12.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-17 23:10:12.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.362][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-17 23:10:12.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-17 23:10:12.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.370][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-17 23:10:12.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-17 23:10:12.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.377][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-17 23:10:12.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-17 23:10:12.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.385][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-07-17 23:10:12.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-17 23:10:12.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.409][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:12.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:12.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.420][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:12.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:12.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.425][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:12.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:12.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.430][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:12.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:12.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.435][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:12.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:12.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.440][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-17 23:10:12.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-17 23:10:12.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.446][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-17 23:10:12.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-17 23:10:12.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:12.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:12.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.456][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-17 23:10:12.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-17 23:10:12.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:12.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:12.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:12.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:12.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:12.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:12.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:12.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:12.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:12.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:12.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:12.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:12.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-17 23:10:12.494][biodb$getFactory()$createEntryFromCo ...] Accession numbers: HMDB0000001.
biodb.TRACE[2024-07-17 23:10:12.499][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-17 23:10:12.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-17 23:10:12.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.507][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-17 23:10:12.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-17 23:10:12.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.515][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-07-17 23:10:12.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-07-17 23:10:12.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.523][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-07-17 23:10:12.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-07-17 23:10:12.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:12.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:12.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.588][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-17 23:10:12.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-17 23:10:12.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:12.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:12.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.615][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:12.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:12.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.620][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:12.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:12.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:12.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:12.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:12.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:12.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:12.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:12.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.643][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-17 23:10:12.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-17 23:10:12.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.659][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-17 23:10:12.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-17 23:10:12.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.668][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-17 23:10:12.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-17 23:10:12.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:12.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:12.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:12.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:12.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:12.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:12.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.731][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:12.733][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:12.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.735][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:12.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:12.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.758][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:12.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:12.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.764][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:12.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:12.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.769][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:12.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:12.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.774][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:12.775][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:12.777][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.778][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.779][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:12.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:12.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.800][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-17 23:10:12.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-17 23:10:12.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.809][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-17 23:10:12.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-17 23:10:12.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.817][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-17 23:10:12.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-17 23:10:12.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.824][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-17 23:10:12.826][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-17 23:10:12.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.830][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.832][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-17 23:10:12.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-17 23:10:12.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.862][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-17 23:10:12.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-17 23:10:12.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.870][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-17 23:10:12.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-17 23:10:12.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.878][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-17 23:10:12.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-17 23:10:12.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.887][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-17 23:10:12.889][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-17 23:10:12.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.893][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.895][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-17 23:10:12.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-17 23:10:12.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.924][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-17 23:10:12.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-17 23:10:12.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.933][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-17 23:10:12.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-17 23:10:12.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.939][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-17 23:10:12.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-17 23:10:12.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.945][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-17 23:10:12.947][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-17 23:10:12.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.955][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.956][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-17 23:10:12.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-17 23:10:12.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.978][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-17 23:10:12.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-17 23:10:12.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.984][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-17 23:10:12.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-17 23:10:12.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.990][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-17 23:10:12.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-17 23:10:12.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:12.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:12.999][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-17 23:10:13.001][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-17 23:10:13.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.005][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.007][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-17 23:10:13.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-17 23:10:13.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.032][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:13.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:13.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.041][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:13.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:13.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.046][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:13.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:13.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.052][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:13.054][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:13.055][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.057][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.059][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:13.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:13.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.092][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:13.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:13.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.098][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:13.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:13.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.103][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:13.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:13.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.108][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:13.110][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:13.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.114][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.116][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:13.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:13.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.135][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-17 23:10:13.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-17 23:10:13.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.143][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-17 23:10:13.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-17 23:10:13.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.150][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-17 23:10:13.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-17 23:10:13.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.155][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-17 23:10:13.157][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-17 23:10:13.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.159][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.160][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-17 23:10:13.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-17 23:10:13.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.195][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-17 23:10:13.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-17 23:10:13.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.200][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-17 23:10:13.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-17 23:10:13.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.208][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-17 23:10:13.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-17 23:10:13.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.216][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-17 23:10:13.218][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-17 23:10:13.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.222][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.231][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-17 23:10:13.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-17 23:10:13.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.296][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-17 23:10:13.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-17 23:10:13.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.305][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-17 23:10:13.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-17 23:10:13.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.313][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-17 23:10:13.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-17 23:10:13.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.321][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-17 23:10:13.323][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-17 23:10:13.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.327][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.329][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-17 23:10:13.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-17 23:10:13.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.359][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-17 23:10:13.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-17 23:10:13.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.367][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-17 23:10:13.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-17 23:10:13.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.375][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-17 23:10:13.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-17 23:10:13.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.383][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-17 23:10:13.385][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-17 23:10:13.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.389][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.391][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-17 23:10:13.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-17 23:10:13.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.416][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-17 23:10:13.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-17 23:10:13.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.422][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-17 23:10:13.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-17 23:10:13.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.428][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-17 23:10:13.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-17 23:10:13.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.433][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-17 23:10:13.435][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-17 23:10:13.436][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.437][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.439][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-17 23:10:13.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-17 23:10:13.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.460][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-17 23:10:13.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-17 23:10:13.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.466][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-17 23:10:13.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-17 23:10:13.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.471][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-17 23:10:13.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-17 23:10:13.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.478][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-17 23:10:13.480][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-17 23:10:13.482][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.484][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.485][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-17 23:10:13.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-17 23:10:13.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.513][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-17 23:10:13.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-17 23:10:13.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.519][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-17 23:10:13.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-17 23:10:13.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.524][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-17 23:10:13.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-17 23:10:13.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.530][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-17 23:10:13.531][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-17 23:10:13.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.533][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.535][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-17 23:10:13.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-17 23:10:13.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.558][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-17 23:10:13.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-17 23:10:13.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.565][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-17 23:10:13.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-17 23:10:13.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.573][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-17 23:10:13.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-17 23:10:13.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.578][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-17 23:10:13.580][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-17 23:10:13.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.582][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.584][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-17 23:10:13.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-17 23:10:13.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.604][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-17 23:10:13.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-17 23:10:13.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.610][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-17 23:10:13.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-17 23:10:13.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.616][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-17 23:10:13.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-17 23:10:13.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.621][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-17 23:10:13.622][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-17 23:10:13.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.625][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.626][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-17 23:10:13.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-17 23:10:13.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.648][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-17 23:10:13.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-17 23:10:13.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.657][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-17 23:10:13.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-17 23:10:13.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.666][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-17 23:10:13.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-17 23:10:13.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.674][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-17 23:10:13.676][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-17 23:10:13.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.679][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.680][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-17 23:10:13.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-17 23:10:13.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.699][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:13.700][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:13.702][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.703][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.714][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-17 23:10:13.716][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-17 23:10:13.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.719][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.727][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-17 23:10:13.728][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-17 23:10:13.729][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.731][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.740][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-17 23:10:13.742][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-17 23:10:13.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.744][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.752][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-17 23:10:13.753][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-17 23:10:13.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.756][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.767][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-17 23:10:13.770][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-17 23:10:13.772][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.774][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.786][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-17 23:10:13.788][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-17 23:10:13.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.801][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.813][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-17 23:10:13.816][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-17 23:10:13.818][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.820][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.831][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:13.833][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:13.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.835][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.844][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-17 23:10:13.846][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-17 23:10:13.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.848][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.863][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-17 23:10:13.864][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-17 23:10:13.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.867][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.875][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-17 23:10:13.877][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-17 23:10:13.878][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.879][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.887][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-17 23:10:13.888][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-17 23:10:13.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.891][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.904][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-17 23:10:13.905][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-17 23:10:13.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.908][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.921][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:13.923][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:13.924][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.926][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.935][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-17 23:10:13.937][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-17 23:10:13.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.939][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.972][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:13.974][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:13.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.977][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:13.994][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-17 23:10:13.996][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-17 23:10:13.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:13.998][ef$get] fields variable is a list.
biodb.INFO [2024-07-17 23:10:14.034][biodb::testThat]
biodb.INFO [2024-07-17 23:10:14.036][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-07-17 23:10:14.039][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-17 23:10:14.041][biodb::testThat]
biodb.DEBUG[2024-07-17 23:10:14.055][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2024-07-17 23:10:14.062][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-07-17 23:10:14.227][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-17 23:10:14.229][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-07-17 23:10:14.232][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2024-07-17 23:10:14.234][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-17 23:10:14.248][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2024-07-17 23:10:14.250][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-07-17 23:10:14.282][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-07-17 23:10:14.283][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-07-17 23:10:14.285][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-17 23:10:14.287][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:14.288][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:14.295][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:14.297][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:14.298][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:14.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-17 23:10:14.304][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:14.305][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:14.306][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.308][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.309][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:14.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:14.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.314][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:14.316][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:14.317][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.318][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.320][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:14.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:14.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.325][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-17 23:10:14.327][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-17 23:10:14.328][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.329][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.331][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-17 23:10:14.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-17 23:10:14.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.336][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-17 23:10:14.338][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-17 23:10:14.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.340][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.342][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-17 23:10:14.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-17 23:10:14.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.347][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-17 23:10:14.348][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-17 23:10:14.350][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.351][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.353][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-17 23:10:14.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-17 23:10:14.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.358][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-17 23:10:14.359][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-17 23:10:14.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.362][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.363][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-17 23:10:14.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-17 23:10:14.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.369][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-17 23:10:14.370][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-17 23:10:14.371][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.373][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.374][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-17 23:10:14.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-17 23:10:14.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.380][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-17 23:10:14.381][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-17 23:10:14.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.383][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.385][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-17 23:10:14.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-17 23:10:14.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.391][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-17 23:10:14.392][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-17 23:10:14.393][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.395][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.396][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-17 23:10:14.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-17 23:10:14.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.402][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-17 23:10:14.403][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-17 23:10:14.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.406][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.407][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-17 23:10:14.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-17 23:10:14.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.413][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-17 23:10:14.414][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-17 23:10:14.415][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.417][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.418][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-17 23:10:14.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-17 23:10:14.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.423][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-17 23:10:14.424][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-17 23:10:14.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.427][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.430][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-17 23:10:14.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-17 23:10:14.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.438][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-17 23:10:14.440][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-17 23:10:14.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.444][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.447][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-17 23:10:14.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-17 23:10:14.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.463][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-17 23:10:14.466][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-17 23:10:14.467][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.469][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.472][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-17 23:10:14.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-17 23:10:14.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.480][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:14.482][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:14.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.485][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.488][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:14.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:14.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.496][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:14.498][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:14.500][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.501][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.504][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:14.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:14.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.512][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-17 23:10:14.514][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-17 23:10:14.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.517][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.520][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-17 23:10:14.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-17 23:10:14.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.525][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-07-17 23:10:14.527][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-17 23:10:14.528][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.529][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.531][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-07-17 23:10:14.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-17 23:10:14.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.536][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:14.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:14.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:14.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:14.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:14.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:14.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.552][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-17 23:10:14.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-17 23:10:14.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.557][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-17 23:10:14.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-17 23:10:14.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.562][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-17 23:10:14.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-17 23:10:14.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.567][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-17 23:10:14.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-17 23:10:14.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.572][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-17 23:10:14.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-17 23:10:14.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.577][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-17 23:10:14.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-17 23:10:14.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.582][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-17 23:10:14.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-17 23:10:14.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.588][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-17 23:10:14.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-17 23:10:14.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.593][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-17 23:10:14.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-17 23:10:14.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.598][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-17 23:10:14.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-17 23:10:14.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.603][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-17 23:10:14.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-17 23:10:14.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.608][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-17 23:10:14.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-17 23:10:14.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.613][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-17 23:10:14.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-17 23:10:14.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.618][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-17 23:10:14.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-17 23:10:14.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.623][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-17 23:10:14.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-17 23:10:14.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.628][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-17 23:10:14.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-17 23:10:14.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.633][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-17 23:10:14.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-17 23:10:14.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.638][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-17 23:10:14.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-17 23:10:14.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.643][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-17 23:10:14.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-17 23:10:14.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.649][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-17 23:10:14.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-17 23:10:14.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.658][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-17 23:10:14.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-17 23:10:14.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.664][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:14.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:14.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.669][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:14.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:14.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.673][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:14.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:14.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.679][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-17 23:10:14.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-17 23:10:14.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.684][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-17 23:10:14.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-17 23:10:14.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.689][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-17 23:10:14.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-17 23:10:14.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.694][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-17 23:10:14.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-17 23:10:14.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.699][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-17 23:10:14.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-17 23:10:14.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.704][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-17 23:10:14.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-17 23:10:14.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.709][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-17 23:10:14.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-17 23:10:14.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.714][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-17 23:10:14.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-17 23:10:14.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.719][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-17 23:10:14.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-17 23:10:14.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.724][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-17 23:10:14.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-17 23:10:14.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.729][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-17 23:10:14.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-17 23:10:14.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.733][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-17 23:10:14.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-17 23:10:14.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.738][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-17 23:10:14.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-17 23:10:14.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.743][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-17 23:10:14.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-17 23:10:14.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.748][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-17 23:10:14.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-17 23:10:14.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.753][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:14.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:14.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.758][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:14.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:14.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.763][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:14.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:14.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.768][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-17 23:10:14.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-17 23:10:14.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.773][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-17 23:10:14.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-17 23:10:14.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.779][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-17 23:10:14.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-17 23:10:14.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.784][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:14.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:14.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.789][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:14.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:14.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.794][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:14.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:14.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.799][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-17 23:10:14.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-17 23:10:14.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.804][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-17 23:10:14.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-17 23:10:14.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.809][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-17 23:10:14.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-17 23:10:14.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.814][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-07-17 23:10:14.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-17 23:10:14.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.819][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-17 23:10:14.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-17 23:10:14.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.829][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-17 23:10:14.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-17 23:10:14.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.834][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-17 23:10:14.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-17 23:10:14.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.839][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-07-17 23:10:14.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-17 23:10:14.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.845][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:14.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:14.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.850][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:14.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:14.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.855][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:14.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:14.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.860][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:14.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:14.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.864][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:14.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:14.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.870][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-17 23:10:14.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-17 23:10:14.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.874][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-17 23:10:14.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-17 23:10:14.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:14.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:14.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.884][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-17 23:10:14.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-17 23:10:14.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:14.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:14.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:14.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:14.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:14.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:14.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:14.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:14.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:14.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:14.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:14.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:14.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-17 23:10:14.919][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2024-07-17 23:10:14.921][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-07-17 23:10:14.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-07-17 23:10:14.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.926][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-07-17 23:10:14.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-07-17 23:10:14.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:14.930][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-07-17 23:10:14.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-07-17 23:10:14.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:14.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-17 23:10:15.222][biodb::testThat]
biodb.INFO [2024-07-17 23:10:15.224][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-07-17 23:10:15.225][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-17 23:10:15.226][biodb::testThat]
biodb.TRACE[2024-07-17 23:10:15.230][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:15.231][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:15.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:15.233][ef$get] fields variable is a list.
biodb.DEBUG[2024-07-17 23:10:15.235][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "name".
biodb.TRACE[2024-07-17 23:10:15.271][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:15.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:15.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:15.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:15.277][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:15.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:15.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:15.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:15.282][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:15.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:15.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:15.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-17 23:10:15.290][function(conn, opt)] With value "1-Methylhistidine".
biodb.DEBUG[2024-07-17 23:10:15.292][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2024-07-17 23:10:15.293][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-07-17 23:10:15.294][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-07-17 23:10:15.296][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-17 23:10:15.298][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-17 23:10:15.300][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-07-17 23:10:15.302][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-17 23:10:15.303][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-07-17 23:10:15.305][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-07-17 23:10:15.306][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-07-17 23:10:15.308][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-07-17 23:10:15.309][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-07-17 23:10:15.310][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-07-17 23:10:15.312][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-07-17 23:10:15.314][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:15.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:15.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:15.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:15.319][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:15.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:15.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:15.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:15.324][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:15.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:15.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:15.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:15.328][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:15.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:15.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:15.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-17 23:10:15.333][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-07-17 23:10:15.335][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-07-17 23:10:15.336][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2024-07-17 23:10:15.361][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:15.363][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:15.364][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:15.365][ef$get] fields variable is a list.
biodb.DEBUG[2024-07-17 23:10:15.367][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "description".
biodb.TRACE[2024-07-17 23:10:15.394][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:15.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:15.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:15.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:15.400][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:15.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:15.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:15.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:15.405][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:15.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:15.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:15.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-17 23:10:15.413][function(conn, opt)] With value "1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.".
biodb.DEBUG[2024-07-17 23:10:15.465][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-07-17 23:10:15.466][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2024-07-17 23:10:15.468][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2024-07-17 23:10:15.480][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-17 23:10:15.483][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-17 23:10:15.484][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-07-17 23:10:15.486][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-17 23:10:15.488][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-07-17 23:10:15.502][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-07-17 23:10:15.504][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-07-17 23:10:15.505][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-07-17 23:10:15.506][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-07-17 23:10:15.508][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-07-17 23:10:15.509][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-07-17 23:10:15.511][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:15.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:15.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:15.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:15.516][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:15.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:15.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:15.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:15.521][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:15.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:15.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:15.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:15.527][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:15.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:15.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:15.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-17 23:10:15.532][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-07-17 23:10:15.533][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-07-17 23:10:15.534][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2024-07-17 23:10:15.563][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:15.565][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:15.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:15.568][ef$get] fields variable is a list.
biodb.DEBUG[2024-07-17 23:10:15.570][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "secondary.accessions".
biodb.TRACE[2024-07-17 23:10:15.600][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:15.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:15.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:15.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:15.605][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:15.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:15.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:15.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:15.610][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:15.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:15.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:15.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-17 23:10:15.624][function(conn, opt)] With value "HMDB00001".
biodb.DEBUG[2024-07-17 23:10:15.626][private$doSearchForEntries] fields NAMES = secondary.accessions
biodb.DEBUG[2024-07-17 23:10:15.627][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2024-07-17 23:10:15.628][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2024-07-17 23:10:15.631][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-17 23:10:15.633][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-17 23:10:15.635][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-07-17 23:10:15.636][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-17 23:10:15.638][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-07-17 23:10:15.639][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-07-17 23:10:15.641][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-07-17 23:10:15.642][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-07-17 23:10:15.643][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-07-17 23:10:15.645][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-07-17 23:10:15.646][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-07-17 23:10:15.648][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:15.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:15.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:15.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:15.654][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:15.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:15.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:15.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:15.659][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:15.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:15.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:15.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:15.664][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:15.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:15.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:15.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-17 23:10:15.669][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-07-17 23:10:15.670][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-07-17 23:10:15.671][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.INFO [2024-07-17 23:10:15.712][biodb::testThat]
biodb.INFO [2024-07-17 23:10:15.715][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-07-17 23:10:15.716][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-17 23:10:15.717][biodb::testThat]
biodb.TRACE[2024-07-17 23:10:15.737][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:15.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:15.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:15.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:15.742][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:15.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:15.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:15.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:15.747][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:15.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:15.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:15.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-17 23:10:15.766][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2024-07-17 23:10:15.767][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-07-17 23:10:15.769][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-07-17 23:10:15.771][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-17 23:10:15.773][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-17 23:10:15.775][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-07-17 23:10:15.777][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-17 23:10:15.778][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-07-17 23:10:15.779][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-07-17 23:10:15.781][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-07-17 23:10:15.782][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-07-17 23:10:15.783][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-07-17 23:10:15.785][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-07-17 23:10:15.786][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-07-17 23:10:15.788][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:15.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:15.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:15.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:15.793][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:15.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:15.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:15.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:15.798][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:15.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:15.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:15.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:15.803][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:15.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:15.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:15.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-17 23:10:15.810][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-07-17 23:10:15.811][private$doSearchForEntries] COUNT IDS = 1
biodb.INFO [2024-07-17 23:10:15.859][biodb::testThat]
biodb.INFO [2024-07-17 23:10:15.860][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-07-17 23:10:15.861][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-17 23:10:15.863][biodb::testThat]
biodb.TRACE[2024-07-17 23:10:15.896][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-17 23:10:15.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-17 23:10:15.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:15.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:15.902][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-17 23:10:15.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-17 23:10:15.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:15.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:15.907][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-07-17 23:10:15.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-07-17 23:10:15.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:15.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:15.912][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-07-17 23:10:15.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-07-17 23:10:15.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:15.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:15.953][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-17 23:10:15.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-17 23:10:15.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:15.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:15.959][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-17 23:10:15.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-17 23:10:15.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:15.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:15.964][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-07-17 23:10:15.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-07-17 23:10:15.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:15.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:15.969][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-07-17 23:10:15.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-07-17 23:10:15.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:15.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-17 23:10:15.987][biodb::testThat]
biodb.INFO [2024-07-17 23:10:15.988][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-07-17 23:10:15.989][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-17 23:10:15.991][biodb::testThat]
biodb.INFO [2024-07-17 23:10:16.016][biodb::testThat]
biodb.INFO [2024-07-17 23:10:16.018][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-07-17 23:10:16.019][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-17 23:10:16.020][biodb::testThat]
biodb.INFO [2024-07-17 23:10:16.060][biodb::testThat]
biodb.INFO [2024-07-17 23:10:16.061][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-07-17 23:10:16.063][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-17 23:10:16.064][biodb::testThat]
biodb.DEBUG[2024-07-17 23:10:16.069][function(conn, opt)] Trying to download "http://www.hmdb.ca/metabolites/HMDB0000001".
biodb.DEBUG[2024-07-17 23:10:16.713][getUrlContent] Use base::url() for downloading content of URL http://www.hmdb.ca/metabolites/HMDB0000001.
biodb.INFO [2024-07-17 23:10:18.064][biodb::testThat]
biodb.INFO [2024-07-17 23:10:18.065][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-07-17 23:10:18.066][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-17 23:10:18.068][biodb::testThat]
biodb.DEBUG[2024-07-17 23:10:18.263][getUrlContent] Use base::url() for downloading content of URL http://www.hmdb.ca/structures/HMDB0000001/image.png.
biodb.TRACE[2024-07-17 23:10:18.500][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:18.502][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:18.503][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:18.505][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:18.506][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:18.507][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:18.509][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:18.510][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:18.511][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:18.513][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:18.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:18.515][ef$get] fields variable is a list.
biodb.INFO [2024-07-17 23:10:18.517][biodb::testThat]
biodb.INFO [2024-07-17 23:10:18.519][biodb::testThat] Running test function  test.wrong.entry  (" Wrong entry gives NULL ").
biodb.INFO [2024-07-17 23:10:18.520][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-17 23:10:18.521][biodb::testThat]
biodb.DEBUG[2024-07-17 23:10:18.524][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2024-07-17 23:10:18.566][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-07-17 23:10:18.569][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-17 23:10:18.571][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-07-17 23:10:18.628][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2024-07-17 23:10:18.630][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-07-17 23:10:18.632][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-07-17 23:10:18.633][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-07-17 23:10:18.635][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-17 23:10:18.637][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-07-17 23:10:18.638][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-07-17 23:10:18.640][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-17 23:10:18.641][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:18.642][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:18.653][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:18.654][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:18.656][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:18.657][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-17 23:10:18.659][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-17 23:10:18.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-17 23:10:18.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:18.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:18.664][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-17 23:10:18.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-17 23:10:18.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:18.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:18.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:18.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:18.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:18.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:18.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:18.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:18.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:18.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:18.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:18.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:18.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:18.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:18.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:18.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:18.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:18.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:18.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:18.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:18.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:18.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:18.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:18.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:18.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:18.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-17 23:10:18.717][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-07-17 23:10:18.719][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2024-07-17 23:10:18.788][biodb::testThat]
biodb.INFO [2024-07-17 23:10:18.790][biodb::testThat] Running test function  test.wrong.entry.among.good.ones  (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2024-07-17 23:10:18.791][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-17 23:10:18.793][biodb::testThat]
biodb.DEBUG[2024-07-17 23:10:18.803][function(conn, opt)] IDS: [2]: "WRONGB, HMDB0000001"
biodb.DEBUG[2024-07-17 23:10:18.805][private$loadEntries] Creating entries from ids [1]: "WRONGB".
biodb.DEBUG[2024-07-17 23:10:18.806][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-07-17 23:10:18.809][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-17 23:10:18.812][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-07-17 23:10:18.816][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGB".
biodb.TRACE[2024-07-17 23:10:18.818][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-07-17 23:10:18.820][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-07-17 23:10:18.822][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-07-17 23:10:18.825][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-17 23:10:18.827][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-07-17 23:10:18.837][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-07-17 23:10:18.841][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-17 23:10:18.843][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:18.844][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:18.855][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:18.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:18.858][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:18.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-17 23:10:18.861][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-17 23:10:18.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-17 23:10:18.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:18.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:18.869][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-17 23:10:18.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-17 23:10:18.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:18.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:18.877][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:18.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:18.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:18.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:18.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:18.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:18.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:18.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:18.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:18.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:18.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:18.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:18.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:18.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:18.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:18.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:18.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:18.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:18.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:18.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:18.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:18.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:18.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:18.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-17 23:10:18.917][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-07-17 23:10:18.919][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2024-07-17 23:10:18.921][function(conn, opt)] Entries: [2]: "NULL, <environment>"
biodb.INFO [2024-07-17 23:10:18.963][biodb::testThat]
biodb.INFO [2024-07-17 23:10:18.965][biodb::testThat] Running test function  test.peak.table  (" The peak table is correct. ").
biodb.INFO [2024-07-17 23:10:18.967][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-17 23:10:18.969][biodb::testThat]
biodb.INFO [2024-07-17 23:10:19.018][biodb::testThat]
biodb.INFO [2024-07-17 23:10:19.020][biodb::testThat] Running test function  test.nb.entries  (" Nb entries is positive. ").
biodb.INFO [2024-07-17 23:10:19.021][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-17 23:10:19.022][biodb::testThat]
biodb.DEBUG[2024-07-17 23:10:19.025][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-17 23:10:19.027][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-17 23:10:19.029][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-07-17 23:10:19.031][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-17 23:10:19.032][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-07-17 23:10:19.034][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-07-17 23:10:19.035][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-07-17 23:10:19.037][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-07-17 23:10:19.038][private$doGetEntryIds] COUNT IDS = 2
biodb.INFO [2024-07-17 23:10:19.065][biodb::testThat]
biodb.INFO [2024-07-17 23:10:19.075][biodb::testThat] Running test function  test.entry.ids  (" We can get a list of entry ids. ").
biodb.INFO [2024-07-17 23:10:19.078][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-17 23:10:19.080][biodb::testThat]
biodb.DEBUG[2024-07-17 23:10:19.085][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-17 23:10:19.088][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-17 23:10:19.091][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-07-17 23:10:19.094][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-17 23:10:19.096][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-07-17 23:10:19.098][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-07-17 23:10:19.100][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-07-17 23:10:19.102][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-07-17 23:10:19.103][private$doGetEntryIds] COUNT IDS = 2
biodb.TRACE[2024-07-17 23:10:19.121][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:19.122][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:19.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:19.125][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:19.126][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:19.127][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:19.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:19.130][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:19.131][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:19.132][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:19.134][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:19.135][ef$get] fields variable is a list.
biodb.INFO [2024-07-17 23:10:19.136][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-07-17 23:10:19.138][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-07-17 23:10:19.145][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-07-17 23:10:19.147][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-07-17 23:10:19.148][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:19.149][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:19.150][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:19.151][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:19.152][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:19.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-07-17 23:10:19.159][biodb::testContext]
biodb.INFO [2024-07-17 23:10:19.160][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-17 23:10:19.161][biodb::testContext] Test context - Test retrieval of entries
biodb.INFO [2024-07-17 23:10:19.163][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-17 23:10:19.164][biodb::testContext]
biodb.INFO [2024-07-17 23:10:19.171][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.13.0.
biodb.DEBUG[2024-07-17 23:10:19.173][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-07-17 23:10:19.179][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-17 23:10:19.180][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-07-17 23:10:19.181][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-07-17 23:10:19.183][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:19.184][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:19.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:19.186][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-07-17 23:10:19.187][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-07-17 23:10:19.189][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:19.190][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:19.191][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:19.192][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-07-17 23:10:19.194][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-07-17 23:10:19.195][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:19.196][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:19.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:19.198][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-07-17 23:10:19.200][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-07-17 23:10:19.201][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-07-17 23:10:19.202][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:19.203][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:19.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:19.205][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-07-17 23:10:19.207][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-07-17 23:10:19.208][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-07-17 23:10:19.209][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:19.210][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:19.211][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:19.213][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-07-17 23:10:19.214][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-07-17 23:10:19.215][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:19.216][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:19.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:19.219][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-07-17 23:10:19.220][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-07-17 23:10:19.221][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-07-17 23:10:19.222][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:19.224][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:19.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:19.226][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-07-17 23:10:19.227][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-07-17 23:10:19.228][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:19.229][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:19.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:19.237][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-07-17 23:10:19.239][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-07-17 23:10:19.240][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-07-17 23:10:19.241][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:19.242][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:19.243][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:19.245][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-07-17 23:10:19.246][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-07-17 23:10:19.247][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-07-17 23:10:19.248][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-07-17 23:10:19.249][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-07-17 23:10:19.251][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-07-17 23:10:19.252][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:19.253][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:19.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:19.255][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-07-17 23:10:19.257][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-07-17 23:10:19.258][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:19.259][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:19.260][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:19.261][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-07-17 23:10:19.262][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-07-17 23:10:19.264][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:19.265][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:19.266][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:19.267][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-07-17 23:10:19.268][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-07-17 23:10:19.270][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:19.271][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:19.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:19.273][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-07-17 23:10:19.274][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-07-17 23:10:19.275][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:19.276][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:19.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:19.279][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-07-17 23:10:19.280][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-07-17 23:10:19.281][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:19.282][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:19.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:19.285][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-07-17 23:10:19.286][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-07-17 23:10:19.289][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-07-17 23:10:19.290][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:19.292][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:19.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:19.294][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-07-17 23:10:19.295][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-07-17 23:10:19.296][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-07-17 23:10:19.298][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:19.299][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:19.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:19.301][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-07-17 23:10:19.303][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-17 23:10:19.304][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-07-17 23:10:19.306][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-17 23:10:19.307][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-17 23:10:19.308][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-17 23:10:19.309][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-17 23:10:19.311][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-17 23:10:19.312][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-17 23:10:19.313][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-17 23:10:19.314][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-17 23:10:19.315][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-17 23:10:19.317][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-07-17 23:10:19.318][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-17 23:10:19.319][self$setPropertyValue]
biodb.DEBUG[2024-07-17 23:10:19.320][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-17 23:10:19.322][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-17 23:10:19.322][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-17 23:10:19.322][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-17 23:10:19.322][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-17 23:10:19.322][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-17 23:10:19.323][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-17 23:10:19.324][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-17 23:10:19.325][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-17 23:10:19.326][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-17 23:10:19.328][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-17 23:10:19.329][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-17 23:10:19.330][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-17 23:10:19.331][self$setPropertyValue]
biodb.DEBUG[2024-07-17 23:10:19.332][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-17 23:10:19.334][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-17 23:10:19.335][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-17 23:10:19.336][self$setPropertyValue]
biodb.DEBUG[2024-07-17 23:10:19.337][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-07-17 23:10:19.339][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-17 23:10:19.341][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-07-17 23:10:19.342][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-17 23:10:19.343][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-17 23:10:19.344][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-17 23:10:19.346][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-17 23:10:19.347][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-17 23:10:19.348][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-17 23:10:19.349][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-17 23:10:19.350][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-17 23:10:19.352][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-17 23:10:19.353][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-07-17 23:10:19.354][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-17 23:10:19.355][self$setPropertyValue]
biodb.DEBUG[2024-07-17 23:10:19.357][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-17 23:10:19.358][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-17 23:10:19.358][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-17 23:10:19.358][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-17 23:10:19.358][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-17 23:10:19.358][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-17 23:10:19.359][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-17 23:10:19.360][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-17 23:10:19.361][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-17 23:10:19.363][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-17 23:10:19.364][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-17 23:10:19.365][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-17 23:10:19.371][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-17 23:10:19.373][self$setPropertyValue]
biodb.DEBUG[2024-07-17 23:10:19.374][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-17 23:10:19.375][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-17 23:10:19.376][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-17 23:10:19.378][self$setPropertyValue]
biodb.DEBUG[2024-07-17 23:10:19.379][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-07-17 23:10:19.381][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-17 23:10:19.382][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-07-17 23:10:19.383][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-17 23:10:19.385][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-17 23:10:19.386][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-17 23:10:19.387][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-17 23:10:19.388][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-17 23:10:19.390][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-17 23:10:19.391][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-17 23:10:19.392][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-17 23:10:19.393][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-17 23:10:19.395][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-07-17 23:10:19.396][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-17 23:10:19.397][self$setPropertyValue]
biodb.DEBUG[2024-07-17 23:10:19.398][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-17 23:10:19.400][self$setPropertyValue]
biodb.DEBUG[2024-07-17 23:10:19.401][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-17 23:10:19.402][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-17 23:10:19.403][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-17 23:10:19.404][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-17 23:10:19.405][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-17 23:10:19.407][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-17 23:10:19.408][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-17 23:10:19.409][self$setPropertyValue]
biodb.DEBUG[2024-07-17 23:10:19.410][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-17 23:10:19.411][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-17 23:10:19.412][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-17 23:10:19.414][self$setPropertyValue]
biodb.DEBUG[2024-07-17 23:10:19.415][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-07-17 23:10:19.417][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-17 23:10:19.418][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-07-17 23:10:19.420][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-17 23:10:19.421][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-17 23:10:19.422][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-17 23:10:19.423][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-17 23:10:19.425][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-17 23:10:19.426][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-17 23:10:19.427][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-17 23:10:19.428][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-17 23:10:19.430][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-17 23:10:19.431][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-07-17 23:10:19.432][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-17 23:10:19.433][self$setPropertyValue]
biodb.DEBUG[2024-07-17 23:10:19.434][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-17 23:10:19.436][self$setPropertyValue]
biodb.DEBUG[2024-07-17 23:10:19.437][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-17 23:10:19.438][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-17 23:10:19.439][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-17 23:10:19.440][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-17 23:10:19.442][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-17 23:10:19.443][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-17 23:10:19.444][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-17 23:10:19.445][self$setPropertyValue]
biodb.DEBUG[2024-07-17 23:10:19.447][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-17 23:10:19.448][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-17 23:10:19.449][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-17 23:10:19.450][self$setPropertyValue]
biodb.DEBUG[2024-07-17 23:10:19.452][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-17 23:10:19.453][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:19.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:19.455][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:19.456][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:19.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:19.458][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:19.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:19.461][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:19.462][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:19.463][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:19.464][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:19.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:19.466][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:19.467][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:19.468][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:19.469][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:19.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:19.472][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:19.473][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:19.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:19.475][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:19.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:19.477][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:19.478][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:19.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:19.481][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:19.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:19.483][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:19.484][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:19.485][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:19.487][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:19.488][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:19.489][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:19.490][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:19.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:19.492][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:19.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:19.494][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:19.495][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:19.497][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:19.503][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:19.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:19.506][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:19.507][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:19.508][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:19.509][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:19.510][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:19.511][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:19.512][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:19.514][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:19.515][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:19.516][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:19.517][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:19.518][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:19.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:19.520][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:19.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:19.523][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:19.524][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:19.525][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:19.526][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:19.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:19.528][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:19.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:19.531][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:19.532][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:19.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:19.534][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:19.535][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:19.536][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:19.537][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:19.538][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:19.540][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:19.541][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:19.542][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:19.543][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:19.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:19.545][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:19.546][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:19.547][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:19.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:19.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:19.551][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:19.552][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:19.553][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:19.554][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:19.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:19.557][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-07-17 23:10:19.558][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-07-17 23:10:19.560][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-07-17 23:10:19.562][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-07-17 23:10:19.563][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-17 23:10:19.565][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-07-17 23:10:19.567][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-07-17 23:10:19.568][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-07-17 23:10:19.570][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-07-17 23:10:19.571][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-07-17 23:10:19.573][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-17 23:10:19.575][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-07-17 23:10:19.576][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-07-17 23:10:19.578][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-07-17 23:10:19.579][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-07-17 23:10:19.581][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-17 23:10:19.583][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-07-17 23:10:19.584][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-07-17 23:10:19.586][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-17 23:10:19.587][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-07-17 23:10:19.589][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-07-17 23:10:19.591][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-07-17 23:10:19.592][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-07-17 23:10:19.594][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-07-17 23:10:19.596][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-07-17 23:10:19.597][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-07-17 23:10:19.599][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-07-17 23:10:19.600][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-07-17 23:10:19.602][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-07-17 23:10:19.604][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-07-17 23:10:19.605][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-07-17 23:10:19.607][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-07-17 23:10:19.608][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-07-17 23:10:19.610][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-07-17 23:10:19.612][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-07-17 23:10:19.613][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-07-17 23:10:19.615][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-07-17 23:10:19.616][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-07-17 23:10:19.618][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-07-17 23:10:19.619][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-07-17 23:10:19.621][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-07-17 23:10:19.628][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-07-17 23:10:19.630][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-07-17 23:10:19.632][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-07-17 23:10:19.634][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-07-17 23:10:19.635][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-07-17 23:10:19.637][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-07-17 23:10:19.638][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-07-17 23:10:19.640][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-07-17 23:10:19.642][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-07-17 23:10:19.643][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-07-17 23:10:19.645][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-07-17 23:10:19.646][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-07-17 23:10:19.648][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-07-17 23:10:19.650][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-07-17 23:10:19.651][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-07-17 23:10:19.653][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-07-17 23:10:19.655][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-07-17 23:10:19.656][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-07-17 23:10:19.658][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-07-17 23:10:19.659][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-07-17 23:10:19.661][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-07-17 23:10:19.662][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-07-17 23:10:19.664][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-07-17 23:10:19.666][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-07-17 23:10:19.667][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-07-17 23:10:19.669][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-17 23:10:19.671][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-17 23:10:19.672][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-07-17 23:10:19.674][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-07-17 23:10:19.675][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-07-17 23:10:19.677][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-07-17 23:10:19.678][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-07-17 23:10:19.680][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-07-17 23:10:19.682][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-07-17 23:10:19.683][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-07-17 23:10:19.685][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-07-17 23:10:19.686][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-07-17 23:10:19.688][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-07-17 23:10:19.690][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-07-17 23:10:19.691][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-07-17 23:10:19.693][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-07-17 23:10:19.695][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-07-17 23:10:19.696][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-07-17 23:10:19.699][initialize] This is biodb version 1.13.0.
biodb.DEBUG[2024-07-17 23:10:19.700][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-17 23:10:19.701][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:19.702][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:19.703][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:19.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:19.706][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:19.707][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:19.708][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:19.709][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:19.710][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:19.711][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:19.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:19.714][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:19.715][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:19.716][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:19.717][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:19.718][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:19.719][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:19.720][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:19.721][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:19.722][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:19.723][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:19.725][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:19.726][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:19.727][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:19.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:19.729][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:19.730][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:19.731][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:19.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:19.733][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:19.735][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:19.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:19.737][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:19.738][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:19.739][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:19.740][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:19.741][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:19.742][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:19.743][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:19.745][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:19.746][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:19.747][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:19.753][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:19.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:19.756][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:19.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:19.758][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:19.760][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:19.761][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:19.762][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:19.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:19.764][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:19.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:19.766][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:19.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:19.769][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:19.770][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:19.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:19.772][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:19.773][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:19.774][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:19.775][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:19.776][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:19.778][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:19.779][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:19.780][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:19.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:19.782][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:19.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:19.784][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:19.785][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:19.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:19.788][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:19.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:19.790][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:19.791][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:19.792][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:19.793][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:19.794][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:19.795][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:19.797][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:19.798][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:19.799][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:19.800][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:19.801][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:19.802][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:19.803][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:19.805][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:19.806][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:19.807][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:19.808][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:19.809][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:19.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:19.811][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:19.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:19.814][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:19.815][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:19.816][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:19.817][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:19.818][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:19.819][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:19.820][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:19.821][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:19.823][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:19.824][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:19.825][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:19.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:19.827][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:19.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:19.829][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:19.831][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:19.832][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:19.833][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:19.834][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:19.835][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:19.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:19.837][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:19.838][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:19.839][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:19.841][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:19.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:19.843][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:19.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:19.847][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-07-17 23:10:19.849][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-07-17 23:10:19.851][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-17 23:10:19.852][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-07-17 23:10:19.854][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-17 23:10:19.855][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-17 23:10:19.856][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-07-17 23:10:19.857][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-07-17 23:10:19.859][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-07-17 23:10:19.860][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-17 23:10:19.861][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-07-17 23:10:19.862][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-17 23:10:19.863][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-17 23:10:19.865][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-07-17 23:10:19.866][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-17 23:10:19.867][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-07-17 23:10:19.867][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-07-17 23:10:19.867][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-07-17 23:10:19.867][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-07-17 23:10:19.867][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-07-17 23:10:19.867][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-07-17 23:10:19.867][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-07-17 23:10:19.867][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-07-17 23:10:19.867][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-07-17 23:10:19.867][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-07-17 23:10:19.867][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-07-17 23:10:19.867][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-07-17 23:10:19.867][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-07-17 23:10:19.867][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-07-17 23:10:19.867][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-07-17 23:10:19.867][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-07-17 23:10:19.867][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-07-17 23:10:19.867][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-07-17 23:10:19.869][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-07-17 23:10:19.870][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-17 23:10:19.870][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-07-17 23:10:19.870][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-07-17 23:10:19.871][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-07-17 23:10:19.872][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-17 23:10:19.874][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-17 23:10:19.875][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-17 23:10:19.876][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-17 23:10:19.877][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-17 23:10:19.878][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-17 23:10:19.879][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-07-17 23:10:19.879][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-07-17 23:10:19.886][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-17 23:10:19.887][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-17 23:10:19.889][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-07-17 23:10:19.890][self$setPropertyValue]
biodb.DEBUG[2024-07-17 23:10:19.896][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-07-17 23:10:19.897][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-07-17 23:10:19.899][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-07-17 23:10:19.901][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-17 23:10:19.903][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-17 23:10:19.906][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-07-17 23:10:19.907][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-07-17 23:10:19.909][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-07-17 23:10:19.911][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-07-17 23:10:19.912][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-17 23:10:19.913][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-17 23:10:19.915][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-07-17 23:10:19.916][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-07-17 23:10:19.918][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-07-17 23:10:19.918][self$setPropertyValue] Setting property "urls" to "F:/biocbuild/bbs-3.20-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-07-17 23:10:19.919][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-17 23:10:19.920][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-17 23:10:19.921][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-07-17 23:10:19.922][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-07-17 23:10:19.924][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-07-17 23:10:19.926][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-07-17 23:10:19.927][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-17 23:10:19.928][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-17 23:10:19.930][private$addConnectorRules] Create new rule for URL "F:/biocbuild/bbs-3.20-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-07-17 23:10:19.932][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-17 23:10:19.933][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-07-17 23:10:19.935][biodb::testThat]
biodb.INFO [2024-07-17 23:10:19.936][biodb::testThat] Running test function  test.hmdbmetabolite.nbentries  (" HMDB metabolite returns enough entries. ").
biodb.INFO [2024-07-17 23:10:19.937][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-17 23:10:19.938][biodb::testThat]
biodb.DEBUG[2024-07-17 23:10:19.944][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-17 23:10:19.946][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-17 23:10:19.948][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-07-17 23:10:19.950][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-17 23:10:19.951][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-07-17 23:10:19.952][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-07-17 23:10:19.954][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-07-17 23:10:19.955][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-07-17 23:10:19.956][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-07-17 23:10:19.960][conn$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2024-07-17 23:10:19.980][biodb::testThat]
biodb.INFO [2024-07-17 23:10:19.982][biodb::testThat] Running test function  test.old.accession  (" We can retrieve entries using old accession numbers. ").
biodb.INFO [2024-07-17 23:10:19.983][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-17 23:10:19.984][biodb::testThat]
biodb.DEBUG[2024-07-17 23:10:19.987][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2024-07-17 23:10:19.988][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-07-17 23:10:19.990][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-17 23:10:19.992][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-07-17 23:10:19.994][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2024-07-17 23:10:19.996][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-17 23:10:20.009][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2024-07-17 23:10:20.011][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-07-17 23:10:20.012][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-07-17 23:10:20.014][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-07-17 23:10:20.016][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-17 23:10:20.017][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:20.018][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:20.025][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:20.027][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:20.029][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:20.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-17 23:10:20.040][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:20.042][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:20.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.044][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:20.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:20.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.051][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:20.052][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:20.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.054][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.056][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:20.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:20.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.061][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-17 23:10:20.062][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-17 23:10:20.064][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.065][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.066][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-17 23:10:20.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-17 23:10:20.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.072][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-17 23:10:20.073][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-17 23:10:20.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.075][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.077][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-17 23:10:20.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-17 23:10:20.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.082][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-17 23:10:20.084][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-17 23:10:20.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.086][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.088][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-17 23:10:20.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-17 23:10:20.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.093][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-17 23:10:20.094][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-17 23:10:20.096][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.097][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.098][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-17 23:10:20.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-17 23:10:20.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.104][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-17 23:10:20.105][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-17 23:10:20.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.107][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.109][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-17 23:10:20.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-17 23:10:20.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.115][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-17 23:10:20.116][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-17 23:10:20.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.119][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.120][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-17 23:10:20.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-17 23:10:20.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.126][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-17 23:10:20.127][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-17 23:10:20.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.129][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.131][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-17 23:10:20.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-17 23:10:20.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.136][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-17 23:10:20.137][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-17 23:10:20.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.140][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.142][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-17 23:10:20.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-17 23:10:20.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.147][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-17 23:10:20.148][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-17 23:10:20.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.151][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.152][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-17 23:10:20.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-17 23:10:20.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.158][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-17 23:10:20.159][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-17 23:10:20.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.162][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.163][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-17 23:10:20.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-17 23:10:20.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.169][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-17 23:10:20.170][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-17 23:10:20.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.178][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.180][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-17 23:10:20.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-17 23:10:20.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.185][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-17 23:10:20.187][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-17 23:10:20.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.191][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.194][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-17 23:10:20.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-17 23:10:20.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.203][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:20.205][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:20.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.207][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.209][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:20.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:20.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.214][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:20.216][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:20.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.218][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.220][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:20.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:20.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.225][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-17 23:10:20.226][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-17 23:10:20.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.228][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.230][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-17 23:10:20.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-17 23:10:20.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.235][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-07-17 23:10:20.237][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-17 23:10:20.238][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.239][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.241][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-07-17 23:10:20.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-17 23:10:20.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:20.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:20.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:20.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:20.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:20.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:20.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.262][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-17 23:10:20.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-17 23:10:20.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.267][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-17 23:10:20.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-17 23:10:20.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.272][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-17 23:10:20.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-17 23:10:20.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.277][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-17 23:10:20.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-17 23:10:20.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.282][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-17 23:10:20.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-17 23:10:20.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.287][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-17 23:10:20.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-17 23:10:20.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.292][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-17 23:10:20.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-17 23:10:20.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.297][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-17 23:10:20.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-17 23:10:20.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.302][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-17 23:10:20.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-17 23:10:20.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.307][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-17 23:10:20.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-17 23:10:20.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.312][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-17 23:10:20.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-17 23:10:20.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.322][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-17 23:10:20.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-17 23:10:20.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.327][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-17 23:10:20.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-17 23:10:20.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.332][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-17 23:10:20.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-17 23:10:20.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.337][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-17 23:10:20.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-17 23:10:20.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.342][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-17 23:10:20.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-17 23:10:20.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.348][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-17 23:10:20.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-17 23:10:20.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.353][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-17 23:10:20.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-17 23:10:20.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.357][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-17 23:10:20.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-17 23:10:20.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.362][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-17 23:10:20.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-17 23:10:20.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.367][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-17 23:10:20.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-17 23:10:20.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.372][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:20.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:20.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.377][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:20.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:20.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.382][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:20.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:20.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.387][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-17 23:10:20.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-17 23:10:20.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.392][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-17 23:10:20.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-17 23:10:20.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.397][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-17 23:10:20.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-17 23:10:20.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.402][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-17 23:10:20.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-17 23:10:20.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.407][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-17 23:10:20.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-17 23:10:20.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.411][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-17 23:10:20.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-17 23:10:20.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.416][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-17 23:10:20.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-17 23:10:20.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.421][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-17 23:10:20.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-17 23:10:20.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.426][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-17 23:10:20.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-17 23:10:20.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.431][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-17 23:10:20.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-17 23:10:20.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.436][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-17 23:10:20.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-17 23:10:20.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.441][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-17 23:10:20.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-17 23:10:20.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.451][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-17 23:10:20.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-17 23:10:20.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.456][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-17 23:10:20.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-17 23:10:20.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.460][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-17 23:10:20.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-17 23:10:20.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.465][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:20.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:20.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.470][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:20.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:20.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.475][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:20.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:20.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.480][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-17 23:10:20.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-17 23:10:20.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.485][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-17 23:10:20.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-17 23:10:20.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.490][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-17 23:10:20.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-17 23:10:20.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.495][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:20.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:20.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.500][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:20.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:20.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.506][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:20.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:20.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.511][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-17 23:10:20.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-17 23:10:20.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.516][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-17 23:10:20.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-17 23:10:20.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.521][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-17 23:10:20.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-17 23:10:20.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.527][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-07-17 23:10:20.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-17 23:10:20.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.532][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-17 23:10:20.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-17 23:10:20.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.537][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-17 23:10:20.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-17 23:10:20.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.542][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-17 23:10:20.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-17 23:10:20.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.548][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-07-17 23:10:20.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-17 23:10:20.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.554][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:20.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:20.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.559][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:20.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:20.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.564][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:20.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:20.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.570][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:20.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:20.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.575][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:20.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:20.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.588][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-17 23:10:20.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-17 23:10:20.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.593][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-17 23:10:20.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-17 23:10:20.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:20.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:20.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.603][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-17 23:10:20.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-17 23:10:20.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:20.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:20.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:20.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:20.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:20.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:20.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.625][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:20.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:20.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:20.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:20.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:20.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:20.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-17 23:10:20.640][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2024-07-17 23:10:20.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:20.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:20.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:20.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:20.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:20.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:20.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:20.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:20.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-17 23:10:20.671][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-07-17 23:10:20.673][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-07-17 23:10:20.674][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-07-17 23:10:20.675][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-07-17 23:10:20.676][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:20.678][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:20.679][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:20.680][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:20.681][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:20.682][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-07-17 23:10:20.687][biodb::testContext]
biodb.INFO [2024-07-17 23:10:20.689][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-17 23:10:20.690][biodb::testContext] Test context - Test search of entries
biodb.INFO [2024-07-17 23:10:20.691][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-17 23:10:20.692][biodb::testContext]
biodb.INFO [2024-07-17 23:10:20.699][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.13.0.
biodb.DEBUG[2024-07-17 23:10:20.701][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-07-17 23:10:20.706][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-17 23:10:20.708][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-07-17 23:10:20.709][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-07-17 23:10:20.710][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:20.711][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:20.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:20.714][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-07-17 23:10:20.715][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-07-17 23:10:20.716][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:20.718][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:20.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:20.722][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-07-17 23:10:20.723][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-07-17 23:10:20.725][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:20.726][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:20.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:20.728][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-07-17 23:10:20.729][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-07-17 23:10:20.730][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-07-17 23:10:20.732][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:20.738][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:20.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:20.741][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-07-17 23:10:20.742][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-07-17 23:10:20.744][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-07-17 23:10:20.745][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:20.746][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:20.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:20.748][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-07-17 23:10:20.750][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-07-17 23:10:20.751][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:20.752][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:20.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:20.755][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-07-17 23:10:20.756][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-07-17 23:10:20.757][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-07-17 23:10:20.758][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:20.760][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:20.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:20.762][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-07-17 23:10:20.764][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-07-17 23:10:20.765][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:20.766][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:20.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:20.768][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-07-17 23:10:20.770][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-07-17 23:10:20.771][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-07-17 23:10:20.772][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:20.773][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:20.774][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:20.775][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-07-17 23:10:20.777][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-07-17 23:10:20.778][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-07-17 23:10:20.779][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-07-17 23:10:20.780][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-07-17 23:10:20.782][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-07-17 23:10:20.783][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:20.784][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:20.785][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:20.786][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-07-17 23:10:20.788][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-07-17 23:10:20.789][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:20.790][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:20.791][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:20.792][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-07-17 23:10:20.793][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-07-17 23:10:20.795][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:20.796][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:20.797][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:20.798][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-07-17 23:10:20.799][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-07-17 23:10:20.800][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:20.802][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:20.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:20.804][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-07-17 23:10:20.805][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-07-17 23:10:20.806][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:20.807][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:20.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:20.810][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-07-17 23:10:20.811][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-07-17 23:10:20.812][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:20.813][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:20.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:20.816][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-07-17 23:10:20.817][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-07-17 23:10:20.820][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-07-17 23:10:20.821][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:20.822][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:20.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:20.825][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-07-17 23:10:20.826][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-07-17 23:10:20.827][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-07-17 23:10:20.828][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:20.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:20.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:20.832][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-07-17 23:10:20.834][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-17 23:10:20.835][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-07-17 23:10:20.837][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-17 23:10:20.838][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-17 23:10:20.839][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-17 23:10:20.840][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-17 23:10:20.842][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-17 23:10:20.843][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-17 23:10:20.844][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-17 23:10:20.845][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-17 23:10:20.846][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-17 23:10:20.848][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-07-17 23:10:20.849][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-17 23:10:20.850][self$setPropertyValue]
biodb.DEBUG[2024-07-17 23:10:20.851][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-17 23:10:20.853][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-17 23:10:20.853][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-17 23:10:20.853][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-17 23:10:20.853][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-17 23:10:20.853][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-17 23:10:20.854][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-17 23:10:20.855][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-17 23:10:20.856][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-17 23:10:20.858][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-17 23:10:20.859][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-17 23:10:20.860][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-17 23:10:20.861][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-17 23:10:20.862][self$setPropertyValue]
biodb.DEBUG[2024-07-17 23:10:20.864][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-17 23:10:20.865][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-17 23:10:20.871][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-17 23:10:20.873][self$setPropertyValue]
biodb.DEBUG[2024-07-17 23:10:20.874][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-07-17 23:10:20.876][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-17 23:10:20.877][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-07-17 23:10:20.879][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-17 23:10:20.880][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-17 23:10:20.881][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-17 23:10:20.882][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-17 23:10:20.883][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-17 23:10:20.885][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-17 23:10:20.886][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-17 23:10:20.887][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-17 23:10:20.888][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-17 23:10:20.890][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-07-17 23:10:20.891][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-17 23:10:20.892][self$setPropertyValue]
biodb.DEBUG[2024-07-17 23:10:20.893][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-17 23:10:20.894][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-17 23:10:20.894][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-17 23:10:20.894][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-17 23:10:20.894][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-17 23:10:20.894][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-17 23:10:20.896][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-17 23:10:20.897][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-17 23:10:20.898][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-17 23:10:20.899][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-17 23:10:20.900][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-17 23:10:20.902][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-17 23:10:20.903][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-17 23:10:20.904][self$setPropertyValue]
biodb.DEBUG[2024-07-17 23:10:20.905][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-17 23:10:20.906][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-17 23:10:20.907][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-17 23:10:20.909][self$setPropertyValue]
biodb.DEBUG[2024-07-17 23:10:20.910][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-07-17 23:10:20.912][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-17 23:10:20.913][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-07-17 23:10:20.914][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-17 23:10:20.916][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-17 23:10:20.917][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-17 23:10:20.918][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-17 23:10:20.919][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-17 23:10:20.921][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-17 23:10:20.922][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-17 23:10:20.923][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-17 23:10:20.924][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-17 23:10:20.926][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-07-17 23:10:20.927][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-17 23:10:20.928][self$setPropertyValue]
biodb.DEBUG[2024-07-17 23:10:20.929][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-17 23:10:20.931][self$setPropertyValue]
biodb.DEBUG[2024-07-17 23:10:20.932][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-17 23:10:20.933][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-17 23:10:20.934][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-17 23:10:20.935][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-17 23:10:20.936][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-17 23:10:20.938][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-17 23:10:20.939][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-17 23:10:20.940][self$setPropertyValue]
biodb.DEBUG[2024-07-17 23:10:20.941][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-17 23:10:20.942][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-17 23:10:20.943][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-17 23:10:20.945][self$setPropertyValue]
biodb.DEBUG[2024-07-17 23:10:20.946][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-07-17 23:10:20.948][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-17 23:10:20.949][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-07-17 23:10:20.951][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-17 23:10:20.952][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-17 23:10:20.953][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-17 23:10:20.955][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-17 23:10:20.956][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-17 23:10:20.957][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-17 23:10:20.959][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-17 23:10:20.960][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-17 23:10:20.961][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-17 23:10:20.962][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-07-17 23:10:20.964][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-17 23:10:20.965][self$setPropertyValue]
biodb.DEBUG[2024-07-17 23:10:20.966][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-17 23:10:20.967][self$setPropertyValue]
biodb.DEBUG[2024-07-17 23:10:20.969][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-17 23:10:20.970][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-17 23:10:20.971][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-17 23:10:20.972][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-17 23:10:20.973][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-17 23:10:20.974][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-17 23:10:20.976][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-17 23:10:20.977][self$setPropertyValue]
biodb.DEBUG[2024-07-17 23:10:20.978][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-17 23:10:20.979][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-17 23:10:20.980][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-17 23:10:20.981][self$setPropertyValue]
biodb.DEBUG[2024-07-17 23:10:20.983][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-17 23:10:20.984][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:20.985][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:20.986][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:20.988][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:20.989][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:20.990][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:20.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:20.997][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:20.999][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:21.000][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:21.001][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:21.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:21.003][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:21.004][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:21.005][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:21.007][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:21.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:21.009][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:21.010][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:21.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:21.012][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:21.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:21.014][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:21.015][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:21.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:21.018][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:21.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:21.020][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:21.021][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:21.022][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:21.023][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:21.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:21.026][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:21.027][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:21.028][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:21.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:21.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:21.031][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:21.032][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:21.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:21.034][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:21.035][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:21.037][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:21.038][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:21.039][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:21.040][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:21.041][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:21.042][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:21.043][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:21.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:21.045][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:21.047][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:21.048][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:21.049][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:21.050][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:21.051][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:21.052][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:21.053][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:21.054][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:21.056][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:21.057][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:21.058][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:21.059][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:21.060][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:21.061][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:21.062][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:21.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:21.064][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:21.066][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:21.067][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:21.068][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:21.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:21.070][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:21.071][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:21.072][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:21.073][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:21.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:21.076][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:21.077][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:21.078][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:21.079][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:21.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:21.081][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:21.082][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:21.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:21.084][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:21.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:21.087][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-07-17 23:10:21.089][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-07-17 23:10:21.090][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-07-17 23:10:21.092][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-07-17 23:10:21.094][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-17 23:10:21.095][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-07-17 23:10:21.097][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-07-17 23:10:21.099][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-07-17 23:10:21.100][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-07-17 23:10:21.102][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-07-17 23:10:21.103][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-17 23:10:21.105][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-07-17 23:10:21.107][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-07-17 23:10:21.108][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-07-17 23:10:21.110][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-07-17 23:10:21.112][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-17 23:10:21.113][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-07-17 23:10:21.115][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-07-17 23:10:21.122][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-17 23:10:21.124][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-07-17 23:10:21.125][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-07-17 23:10:21.127][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-07-17 23:10:21.128][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-07-17 23:10:21.130][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-07-17 23:10:21.132][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-07-17 23:10:21.133][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-07-17 23:10:21.135][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-07-17 23:10:21.136][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-07-17 23:10:21.138][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-07-17 23:10:21.139][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-07-17 23:10:21.141][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-07-17 23:10:21.143][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-07-17 23:10:21.144][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-07-17 23:10:21.146][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-07-17 23:10:21.147][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-07-17 23:10:21.149][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-07-17 23:10:21.151][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-07-17 23:10:21.152][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-07-17 23:10:21.154][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-07-17 23:10:21.155][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-07-17 23:10:21.157][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-07-17 23:10:21.158][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-07-17 23:10:21.160][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-07-17 23:10:21.162][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-07-17 23:10:21.163][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-07-17 23:10:21.165][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-07-17 23:10:21.166][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-07-17 23:10:21.168][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-07-17 23:10:21.170][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-07-17 23:10:21.171][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-07-17 23:10:21.173][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-07-17 23:10:21.175][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-07-17 23:10:21.176][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-07-17 23:10:21.178][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-07-17 23:10:21.179][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-07-17 23:10:21.181][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-07-17 23:10:21.182][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-07-17 23:10:21.184][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-07-17 23:10:21.186][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-07-17 23:10:21.187][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-07-17 23:10:21.189][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-07-17 23:10:21.190][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-07-17 23:10:21.192][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-07-17 23:10:21.194][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-07-17 23:10:21.195][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-07-17 23:10:21.197][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-07-17 23:10:21.198][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-17 23:10:21.200][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-17 23:10:21.201][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-07-17 23:10:21.203][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-07-17 23:10:21.205][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-07-17 23:10:21.206][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-07-17 23:10:21.208][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-07-17 23:10:21.209][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-07-17 23:10:21.211][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-07-17 23:10:21.212][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-07-17 23:10:21.214][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-07-17 23:10:21.216][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-07-17 23:10:21.217][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-07-17 23:10:21.219][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-07-17 23:10:21.220][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-07-17 23:10:21.222][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-07-17 23:10:21.224][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-07-17 23:10:21.225][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-07-17 23:10:21.228][initialize] This is biodb version 1.13.0.
biodb.DEBUG[2024-07-17 23:10:21.229][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-17 23:10:21.230][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:21.237][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:21.238][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:21.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:21.241][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:21.242][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:21.243][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:21.244][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:21.245][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:21.246][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:21.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:21.248][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:21.249][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:21.250][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:21.252][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:21.253][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:21.254][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:21.255][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:21.256][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:21.257][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:21.258][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:21.259][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:21.260][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:21.262][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:21.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:21.264][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:21.265][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:21.266][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:21.267][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:21.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:21.269][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:21.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:21.272][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:21.273][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:21.274][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:21.275][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:21.276][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:21.277][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:21.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:21.279][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:21.280][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:21.282][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:21.283][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:21.284][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:21.285][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:21.286][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:21.287][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:21.288][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:21.289][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:21.290][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:21.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:21.293][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:21.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:21.295][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:21.296][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:21.297][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:21.299][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:21.300][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:21.301][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:21.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:21.303][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:21.304][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:21.305][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:21.306][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:21.308][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:21.309][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:21.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:21.311][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:21.312][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:21.313][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:21.314][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:21.315][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:21.317][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:21.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:21.319][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:21.320][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:21.321][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:21.322][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:21.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:21.324][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:21.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:21.327][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:21.328][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:21.329][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:21.330][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:21.331][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:21.332][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:21.334][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:21.335][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:21.336][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:21.337][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:21.338][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:21.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:21.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:21.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:21.343][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:21.344][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:21.346][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:21.347][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:21.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:21.349][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:21.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:21.351][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:21.353][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:21.354][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:21.355][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:21.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:21.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:21.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:21.366][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:21.367][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:21.368][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:21.369][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:21.370][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:21.371][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:21.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:21.374][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-17 23:10:21.375][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:21.376][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:21.377][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:21.378][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:21.379][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:21.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:21.384][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-07-17 23:10:21.386][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-07-17 23:10:21.388][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-17 23:10:21.390][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-07-17 23:10:21.391][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-17 23:10:21.392][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-17 23:10:21.394][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-07-17 23:10:21.395][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-07-17 23:10:21.396][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-07-17 23:10:21.397][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-17 23:10:21.399][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-07-17 23:10:21.400][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-17 23:10:21.401][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-17 23:10:21.403][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-07-17 23:10:21.404][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-17 23:10:21.405][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-07-17 23:10:21.405][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-07-17 23:10:21.405][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-07-17 23:10:21.405][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-07-17 23:10:21.405][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-07-17 23:10:21.405][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-07-17 23:10:21.405][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-07-17 23:10:21.405][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-07-17 23:10:21.405][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-07-17 23:10:21.405][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-07-17 23:10:21.405][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-07-17 23:10:21.405][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-07-17 23:10:21.405][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-07-17 23:10:21.405][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-07-17 23:10:21.405][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-07-17 23:10:21.405][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-07-17 23:10:21.405][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-07-17 23:10:21.405][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-07-17 23:10:21.407][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-07-17 23:10:21.408][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-17 23:10:21.408][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-07-17 23:10:21.408][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-07-17 23:10:21.409][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-07-17 23:10:21.410][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-17 23:10:21.412][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-17 23:10:21.413][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-17 23:10:21.414][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-17 23:10:21.415][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-17 23:10:21.416][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-17 23:10:21.418][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-07-17 23:10:21.418][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-07-17 23:10:21.419][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-17 23:10:21.420][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-17 23:10:21.421][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-07-17 23:10:21.423][self$setPropertyValue]
biodb.DEBUG[2024-07-17 23:10:21.429][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-07-17 23:10:21.431][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-07-17 23:10:21.432][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-07-17 23:10:21.434][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-17 23:10:21.436][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-17 23:10:21.440][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-07-17 23:10:21.441][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-07-17 23:10:21.443][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-07-17 23:10:21.445][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-07-17 23:10:21.446][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-17 23:10:21.448][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-17 23:10:21.450][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-07-17 23:10:21.451][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-07-17 23:10:21.452][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-07-17 23:10:21.452][self$setPropertyValue] Setting property "urls" to "F:/biocbuild/bbs-3.20-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-07-17 23:10:21.453][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-17 23:10:21.455][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-17 23:10:21.456][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-07-17 23:10:21.457][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-07-17 23:10:21.458][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-07-17 23:10:21.460][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-07-17 23:10:21.462][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-17 23:10:21.463][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-17 23:10:21.465][private$addConnectorRules] Create new rule for URL "F:/biocbuild/bbs-3.20-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-07-17 23:10:21.466][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-17 23:10:21.467][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-07-17 23:10:21.469][biodb::testThat]
biodb.INFO [2024-07-17 23:10:21.471][biodb::testThat] Running test function  test.searchMultipleWordsInDescription  (" We can search for multiple words inside description field. ").
biodb.INFO [2024-07-17 23:10:21.472][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-17 23:10:21.473][biodb::testThat]
biodb.DEBUG[2024-07-17 23:10:21.475][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-07-17 23:10:21.477][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2024-07-17 23:10:21.478][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2024-07-17 23:10:21.482][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-17 23:10:21.484][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-17 23:10:21.486][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-07-17 23:10:21.488][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-17 23:10:21.489][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-07-17 23:10:21.496][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-07-17 23:10:21.498][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-07-17 23:10:21.499][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-07-17 23:10:21.500][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-07-17 23:10:21.502][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-07-17 23:10:21.503][private$doSearchForEntries] Total number of IDs = 2
biodb.DEBUG[2024-07-17 23:10:21.505][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2024-07-17 23:10:21.506][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-07-17 23:10:21.508][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-17 23:10:21.510][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-07-17 23:10:21.512][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2024-07-17 23:10:21.514][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-17 23:10:21.517][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2024-07-17 23:10:21.519][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-07-17 23:10:21.520][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-07-17 23:10:21.522][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-07-17 23:10:21.524][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-17 23:10:21.525][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:21.526][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:21.545][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:21.546][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:21.547][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:21.549][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-17 23:10:21.553][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:21.554][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:21.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.557][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:21.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:21.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.563][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:21.565][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:21.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.567][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.569][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:21.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:21.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.574][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-17 23:10:21.575][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-17 23:10:21.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.578][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.579][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-17 23:10:21.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-17 23:10:21.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.585][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-17 23:10:21.586][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-17 23:10:21.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.588][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.590][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-17 23:10:21.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-17 23:10:21.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.595][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-17 23:10:21.596][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-17 23:10:21.598][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.599][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.600][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-17 23:10:21.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-17 23:10:21.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.606][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-17 23:10:21.607][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-17 23:10:21.608][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.609][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.611][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-17 23:10:21.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-17 23:10:21.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.616][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-17 23:10:21.618][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-17 23:10:21.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.620][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.622][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-17 23:10:21.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-17 23:10:21.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.627][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-17 23:10:21.628][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-17 23:10:21.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.630][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.632][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-17 23:10:21.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-17 23:10:21.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.637][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-17 23:10:21.649][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-17 23:10:21.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.652][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.654][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-17 23:10:21.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-17 23:10:21.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.659][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-17 23:10:21.661][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-17 23:10:21.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.663][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.665][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-17 23:10:21.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-17 23:10:21.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.670][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-17 23:10:21.671][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-17 23:10:21.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.673][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.675][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-17 23:10:21.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-17 23:10:21.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.680][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-17 23:10:21.682][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-17 23:10:21.683][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.684][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.686][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-17 23:10:21.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-17 23:10:21.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.691][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-17 23:10:21.692][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-17 23:10:21.694][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.695][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.696][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-17 23:10:21.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-17 23:10:21.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.702][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-17 23:10:21.703][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-17 23:10:21.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.705][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.707][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-17 23:10:21.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-17 23:10:21.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.712][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:21.714][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:21.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.716][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.717][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:21.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:21.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.723][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:21.724][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:21.725][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.726][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.728][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:21.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:21.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.733][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-17 23:10:21.735][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-17 23:10:21.737][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.739][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.742][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-17 23:10:21.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-17 23:10:21.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.750][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-07-17 23:10:21.752][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-17 23:10:21.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.756][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.759][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-07-17 23:10:21.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-17 23:10:21.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.768][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:21.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:21.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:21.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:21.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:21.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:21.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.793][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-17 23:10:21.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-17 23:10:21.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.802][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-17 23:10:21.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-17 23:10:21.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.810][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-17 23:10:21.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-17 23:10:21.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.828][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-17 23:10:21.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-17 23:10:21.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.837][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-17 23:10:21.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-17 23:10:21.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.845][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-17 23:10:21.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-17 23:10:21.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.852][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-17 23:10:21.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-17 23:10:21.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.860][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-17 23:10:21.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-17 23:10:21.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.869][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-17 23:10:21.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-17 23:10:21.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.877][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-17 23:10:21.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-17 23:10:21.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.885][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-17 23:10:21.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-17 23:10:21.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.893][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-17 23:10:21.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-17 23:10:21.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.901][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-17 23:10:21.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-17 23:10:21.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.909][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-17 23:10:21.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-17 23:10:21.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.917][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-17 23:10:21.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-17 23:10:21.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.925][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-17 23:10:21.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-17 23:10:21.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.933][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-17 23:10:21.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-17 23:10:21.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.941][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-17 23:10:21.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-17 23:10:21.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.946][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-17 23:10:21.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-17 23:10:21.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.951][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-17 23:10:21.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-17 23:10:21.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.956][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-17 23:10:21.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-17 23:10:21.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.961][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:21.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:21.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.966][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:21.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:21.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.971][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:21.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:21.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.976][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-17 23:10:21.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-17 23:10:21.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.981][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-17 23:10:21.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-17 23:10:21.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.986][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-17 23:10:21.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-17 23:10:21.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:21.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:21.991][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-17 23:10:21.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-17 23:10:21.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.002][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-17 23:10:22.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-17 23:10:22.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.008][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-17 23:10:22.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-17 23:10:22.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.013][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-17 23:10:22.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-17 23:10:22.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.020][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-17 23:10:22.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-17 23:10:22.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.027][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-17 23:10:22.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-17 23:10:22.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.033][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-17 23:10:22.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-17 23:10:22.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.038][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-17 23:10:22.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-17 23:10:22.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.043][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-17 23:10:22.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-17 23:10:22.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.049][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-17 23:10:22.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-17 23:10:22.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.054][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-17 23:10:22.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-17 23:10:22.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.059][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-17 23:10:22.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-17 23:10:22.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.064][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:22.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:22.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.069][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:22.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:22.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.074][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:22.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:22.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.079][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-17 23:10:22.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-17 23:10:22.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.084][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-17 23:10:22.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-17 23:10:22.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.089][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-17 23:10:22.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-17 23:10:22.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.094][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:22.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:22.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.099][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:22.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:22.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.104][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:22.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:22.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.109][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-17 23:10:22.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-17 23:10:22.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.114][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-17 23:10:22.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-17 23:10:22.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.119][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-17 23:10:22.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-17 23:10:22.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.124][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-07-17 23:10:22.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-17 23:10:22.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.129][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-17 23:10:22.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-17 23:10:22.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.139][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-17 23:10:22.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-17 23:10:22.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.145][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-17 23:10:22.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-17 23:10:22.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.151][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-07-17 23:10:22.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-17 23:10:22.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.157][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:22.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:22.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.162][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:22.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:22.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.167][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:22.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:22.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.172][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:22.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:22.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.177][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:22.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:22.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.182][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-17 23:10:22.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-17 23:10:22.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.187][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-17 23:10:22.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-17 23:10:22.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:22.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:22.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.197][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-17 23:10:22.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-17 23:10:22.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.203][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:22.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:22.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:22.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:22.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:22.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:22.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:22.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:22.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:22.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:22.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:22.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:22.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-17 23:10:22.233][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2024-07-17 23:10:22.234][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:22.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:22.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.239][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:22.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:22.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.244][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:22.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:22.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.249][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:22.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:22.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-17 23:10:22.254][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-07-17 23:10:22.255][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-07-17 23:10:22.256][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-17 23:10:22.257][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:22.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:22.280][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:22.282][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:22.283][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:22.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:22.286][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2024-07-17 23:10:22.287][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-07-17 23:10:22.289][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-17 23:10:22.291][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-07-17 23:10:22.294][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2024-07-17 23:10:22.295][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-17 23:10:22.298][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2024-07-17 23:10:22.299][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-07-17 23:10:22.301][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-07-17 23:10:22.302][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-07-17 23:10:22.304][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-17 23:10:22.305][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:22.307][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:22.319][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:22.321][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:22.322][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:22.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-17 23:10:22.326][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:22.328][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:22.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.332][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:22.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:22.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.343][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:22.345][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:22.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.349][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.351][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:22.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:22.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.360][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-17 23:10:22.362][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-17 23:10:22.364][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.365][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.368][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-17 23:10:22.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-17 23:10:22.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.376][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-17 23:10:22.378][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-17 23:10:22.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.382][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.384][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-17 23:10:22.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-17 23:10:22.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.393][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-17 23:10:22.395][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-17 23:10:22.397][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.398][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.401][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-17 23:10:22.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-17 23:10:22.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.409][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-17 23:10:22.411][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-17 23:10:22.413][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.415][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.417][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-17 23:10:22.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-17 23:10:22.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.425][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-17 23:10:22.427][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-17 23:10:22.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.431][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.433][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-17 23:10:22.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-17 23:10:22.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.441][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-17 23:10:22.443][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-17 23:10:22.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.447][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.450][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-17 23:10:22.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-17 23:10:22.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.466][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-17 23:10:22.469][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-17 23:10:22.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.473][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.475][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-17 23:10:22.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-17 23:10:22.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.484][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-17 23:10:22.486][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-17 23:10:22.488][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.489][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.492][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-17 23:10:22.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-17 23:10:22.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.500][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-17 23:10:22.501][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-17 23:10:22.502][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.504][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.507][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-17 23:10:22.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-17 23:10:22.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.516][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-17 23:10:22.518][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-17 23:10:22.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.522][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.525][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-17 23:10:22.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-17 23:10:22.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.532][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-17 23:10:22.534][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-17 23:10:22.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.536][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.538][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-17 23:10:22.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-17 23:10:22.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.543][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-17 23:10:22.544][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-17 23:10:22.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.547][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.548][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-17 23:10:22.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-17 23:10:22.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.553][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:22.555][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:22.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.557][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.559][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:22.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:22.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.564][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:22.565][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:22.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.567][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.569][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:22.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:22.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.574][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-17 23:10:22.575][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-17 23:10:22.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.578][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.579][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-17 23:10:22.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-17 23:10:22.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.585][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-07-17 23:10:22.586][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-17 23:10:22.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.588][ef$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.590][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-07-17 23:10:22.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-17 23:10:22.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:22.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:22.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.600][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:22.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:22.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:22.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:22.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.610][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-17 23:10:22.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-17 23:10:22.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.615][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-17 23:10:22.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-17 23:10:22.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.626][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-17 23:10:22.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-17 23:10:22.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.632][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-17 23:10:22.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-17 23:10:22.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.637][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-17 23:10:22.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-17 23:10:22.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.643][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-17 23:10:22.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-17 23:10:22.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-17 23:10:22.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-17 23:10:22.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.653][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-17 23:10:22.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-17 23:10:22.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.659][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-17 23:10:22.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-17 23:10:22.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.665][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-17 23:10:22.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-17 23:10:22.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.670][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-17 23:10:22.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-17 23:10:22.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-17 23:10:22.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-17 23:10:22.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.680][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-17 23:10:22.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-17 23:10:22.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.685][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-17 23:10:22.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-17 23:10:22.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.690][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-17 23:10:22.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-17 23:10:22.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.695][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-17 23:10:22.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-17 23:10:22.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.700][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-17 23:10:22.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-17 23:10:22.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.705][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-17 23:10:22.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-17 23:10:22.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.710][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-17 23:10:22.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-17 23:10:22.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.715][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-17 23:10:22.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-17 23:10:22.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.720][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-17 23:10:22.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-17 23:10:22.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.725][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:22.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:22.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.730][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:22.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:22.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.735][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:22.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:22.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.740][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-17 23:10:22.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-17 23:10:22.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.745][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-17 23:10:22.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-17 23:10:22.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.751][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-17 23:10:22.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-17 23:10:22.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.762][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-17 23:10:22.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-17 23:10:22.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.768][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-17 23:10:22.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-17 23:10:22.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.774][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-17 23:10:22.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-17 23:10:22.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.779][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-17 23:10:22.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-17 23:10:22.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.784][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-17 23:10:22.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-17 23:10:22.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.789][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-17 23:10:22.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-17 23:10:22.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.794][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-17 23:10:22.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-17 23:10:22.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.799][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-17 23:10:22.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-17 23:10:22.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.804][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-17 23:10:22.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-17 23:10:22.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.809][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-17 23:10:22.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-17 23:10:22.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.815][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-17 23:10:22.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-17 23:10:22.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.822][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-17 23:10:22.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-17 23:10:22.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.828][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:22.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:22.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.833][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:22.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:22.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.838][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:22.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:22.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.843][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-17 23:10:22.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-17 23:10:22.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.848][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-17 23:10:22.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-17 23:10:22.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.853][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-17 23:10:22.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-17 23:10:22.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.858][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:22.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:22.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.863][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:22.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:22.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.869][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:22.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-17 23:10:22.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.874][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-17 23:10:22.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-17 23:10:22.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.879][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-17 23:10:22.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-17 23:10:22.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.884][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-17 23:10:22.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-17 23:10:22.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.889][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-07-17 23:10:22.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-17 23:10:22.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.894][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-17 23:10:22.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-17 23:10:22.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.905][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-17 23:10:22.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-17 23:10:22.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.910][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-17 23:10:22.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-17 23:10:22.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.915][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-07-17 23:10:22.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-17 23:10:22.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.921][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:22.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:22.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.926][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:22.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:22.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.932][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:22.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:22.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.936][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:22.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:22.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.942][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-17 23:10:22.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-17 23:10:22.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.947][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-17 23:10:22.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-17 23:10:22.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.952][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-17 23:10:22.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-17 23:10:22.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:22.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:22.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.962][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-17 23:10:22.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-17 23:10:22.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:22.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:22.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:22.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:22.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.977][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:22.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:22.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:22.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:22.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:22.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:22.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:22.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:22.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-17 23:10:22.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-17 23:10:23.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:23.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-17 23:10:23.003][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2024-07-17 23:10:23.005][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:23.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:23.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:23.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:23.010][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:23.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:23.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:23.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:23.015][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:23.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:23.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:23.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:23.022][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:23.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:23.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:23.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-17 23:10:23.029][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-07-17 23:10:23.031][private$doSearchForEntries] COUNT IDS = 2
biodb.DEBUG[2024-07-17 23:10:23.033][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-17 23:10:23.035][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:23.037][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:23.055][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:23.057][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:23.058][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:23.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:23.066][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-07-17 23:10:23.067][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2024-07-17 23:10:23.068][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2024-07-17 23:10:23.070][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-17 23:10:23.072][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-17 23:10:23.074][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-07-17 23:10:23.076][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-17 23:10:23.077][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-07-17 23:10:23.079][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-07-17 23:10:23.080][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-07-17 23:10:23.081][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-07-17 23:10:23.083][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-07-17 23:10:23.084][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-07-17 23:10:23.085][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-07-17 23:10:23.087][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:23.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:23.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:23.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:23.092][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:23.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:23.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:23.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:23.097][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:23.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:23.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:23.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:23.102][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:23.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:23.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:23.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:23.107][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:23.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:23.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:23.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:23.112][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:23.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:23.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:23.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:23.117][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:23.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:23.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:23.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-17 23:10:23.122][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-07-17 23:10:23.123][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-07-17 23:10:23.125][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-17 23:10:23.126][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:23.127][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:23.138][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:23.139][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:23.141][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:23.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-17 23:10:23.146][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:23.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:23.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:23.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:23.154][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:23.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:23.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:23.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:23.163][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:23.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:23.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:23.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:23.171][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:23.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:23.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:23.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:23.179][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:23.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:23.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:23.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:23.188][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:23.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:23.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:23.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:23.193][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:23.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:23.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:23.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-17 23:10:23.198][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2024-07-17 23:10:23.200][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-07-17 23:10:23.201][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-17 23:10:23.202][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:23.203][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:23.221][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:23.223][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:23.224][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:23.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-17 23:10:23.231][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-07-17 23:10:23.233][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2024-07-17 23:10:23.234][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2024-07-17 23:10:23.237][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-17 23:10:23.240][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-17 23:10:23.243][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-07-17 23:10:23.245][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-17 23:10:23.247][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-07-17 23:10:23.249][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-07-17 23:10:23.251][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-07-17 23:10:23.252][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-07-17 23:10:23.254][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-07-17 23:10:23.255][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-07-17 23:10:23.256][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-07-17 23:10:23.258][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:23.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:23.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:23.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:23.264][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:23.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:23.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:23.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:23.269][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:23.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:23.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:23.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:23.274][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:23.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:23.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:23.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:23.279][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:23.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:23.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:23.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:23.286][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:23.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:23.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:23.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:23.295][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:23.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:23.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:23.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-17 23:10:23.303][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2024-07-17 23:10:23.305][private$doSearchForEntries] COUNT IDS = 0
biodb.DEBUG[2024-07-17 23:10:23.308][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-17 23:10:23.310][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:23.312][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:23.320][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:23.321][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:23.323][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:23.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-17 23:10:23.325][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:23.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:23.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:23.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:23.331][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:23.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:23.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:23.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:23.336][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:23.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:23.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:23.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:23.341][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:23.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:23.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:23.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:23.346][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:23.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:23.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:23.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:23.351][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:23.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:23.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:23.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-17 23:10:23.356][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-17 23:10:23.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-17 23:10:23.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-17 23:10:23.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-17 23:10:23.362][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-07-17 23:10:23.363][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-07-17 23:10:23.364][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-17 23:10:23.365][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:23.366][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:23.379][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:23.381][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:23.382][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:23.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-07-17 23:10:23.397][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-07-17 23:10:23.399][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-07-17 23:10:23.400][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-07-17 23:10:23.401][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-07-17 23:10:23.402][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-17 23:10:23.404][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-17 23:10:23.405][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-17 23:10:23.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-17 23:10:23.407][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-07-17 23:10:23.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 243 ]
> 
> proc.time()
   user  system elapsed 
  11.67    0.81   16.10

Example timings