Multiple platform build/check report for BioC 3.20 - BUILD results for biobtreeR on nebbiolo2

Hostname	OS	Arch (*)	R version	Installed pkgs
teran2	Linux (Ubuntu 24.04.1 LTS)	x86_64	4.4.1 (2024-06-14) -- "Race for Your Life"	4461
nebbiolo2	Linux (Ubuntu 22.04.3 LTS)	x86_64	4.4.1 (2024-06-14) -- "Race for Your Life"	4716
palomino8	Windows Server 2022 Datacenter	x64	4.4.1 (2024-06-14 ucrt) -- "Race for Your Life"	4466
lconway	macOS 12.7.1 Monterey	x86_64	4.4.1 (2024-06-14) -- "Race for Your Life"	4498
kjohnson3	macOS 13.6.5 Ventura	arm64	4.4.1 (2024-06-14) -- "Race for Your Life"	4446
kunpeng2	Linux (openEuler 22.03 LTS-SP1)	aarch64	4.4.1 (2024-06-14) -- "Race for Your Life"	4445
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for biobtreeR on nebbiolo2

To the developers/maintainers of the biobtreeR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biobtreeR.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: biobtreeR

Version: 1.17.0

Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 biobtreeR

StartedAt: 2024-10-02 16:23:34 -0400 (Wed, 02 Oct 2024)

EndedAt: 2024-10-02 16:23:58 -0400 (Wed, 02 Oct 2024)

EllapsedTime: 24.0 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 biobtreeR
###
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* checking for file ‘biobtreeR/DESCRIPTION’ ... OK
* preparing ‘biobtreeR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘biobtreeR.Rmd’ using rmarkdown
trying URL 'https://github.com/tamerh/biobtree/releases/download/v1.8.0/biobtree_Linux_64bit.tar.gz'
Content type 'application/octet-stream' length 11081624 bytes (10.6 MB)
==================================================
downloaded 10.6 MB

biobtree
trying URL 'https://github.com/tamerh/biobtree/releases/download/v1.8.0/biobtree_Linux_64bit.tar.gz'
Content type 'application/octet-stream' length 11081624 bytes (10.6 MB)
==================================================
downloaded 10.6 MB

biobtree
2024/10/02 16:23:44 Pulling configuration files from https://github.com/tamerh/biobtree-conf/archive/1.11.0.zip 
2024/10/02 16:23:45 Pulling done.
2024/10/02 16:23:45 Pulling pre-build db files from https://github.com/tamerh/biobtree-conf/releases/download/1.11.0/biobtree-conf-1.11.0-set1.tar.gz 
2024/10/02 16:23:57 ExtractTarGz: Copy() failed: write out/db/data.mdb: no space left on device
Warning in file("", "w+b") :
  cannot open file '/tmp/Rtmphlv7Ni/Rf3ad8475e96d708': No space left on device
Warning in file(con, "w") :
  cannot open file 'biobtreeR.knit.md': No space left on device
Error: processing vignette 'biobtreeR.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘biobtreeR.Rmd’

SUMMARY: processing the following file failed:
  ‘biobtreeR.Rmd’

Error: Vignette re-building failed.
Execution halted