Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-06-11 15:42 -0400 (Tue, 11 Jun 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" | 4679 |
palomino4 | Windows Server 2022 Datacenter | x64 | 4.4.0 RC (2024-04-16 r86468 ucrt) -- "Puppy Cup" | 4414 |
merida1 | macOS 12.7.4 Monterey | x86_64 | 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" | 4441 |
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" | 4394 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 134/2239 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
basilisk 1.17.0 (landing page) Aaron Lun
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ![]() | ||||||||
merida1 | macOS 12.7.4 Monterey / x86_64 | OK | OK | TIMEOUT | OK | |||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | ![]() | ||||||||
To the developers/maintainers of the basilisk package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/basilisk.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: basilisk |
Version: 1.17.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:basilisk.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings basilisk_1.17.0.tar.gz |
StartedAt: 2024-06-10 12:26:32 -0400 (Mon, 10 Jun 2024) |
EndedAt: 2024-06-10 12:53:25 -0400 (Mon, 10 Jun 2024) |
EllapsedTime: 1613.6 seconds |
RetCode: 0 |
Status: OK |
CheckDir: basilisk.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:basilisk.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings basilisk_1.17.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck’ * using R version 4.4.0 Patched (2024-04-24 r86482) * using platform: aarch64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.6.6 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘basilisk/DESCRIPTION’ ... OK * this is package ‘basilisk’ version ‘1.17.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: inst/example/.BBSoptions These were most likely included in error. See section ‘Package structure’ in the ‘Writing R Extensions’ manual. * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘basilisk’ can be installed ... NOTE Found the following notes/warnings: Non-staged installation was used See ‘/Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/00install.out’ for details. * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in shell scripts ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed basiliskStart 195.468 47.982 274.045 createLocalBasiliskEnv 68.327 21.879 99.432 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/00check.log’ for details.
basilisk.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL basilisk ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘basilisk’ ... ** using non-staged installation via StagedInstall field ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (basilisk)
basilisk.Rcheck/tests/testthat.Rout
R version 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: aarch64-apple-darwin20 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(basilisk) Loading required package: reticulate > if (.Platform$OS.type != "windows") test_check("basilisk") Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source. Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo added / updated specs: - python=3.9.12 The following NEW packages will be INSTALLED: bzip2 conda-forge/osx-arm64::bzip2-1.0.8-h93a5062_5 ca-certificates conda-forge/osx-arm64::ca-certificates-2024.6.2-hf0a4a13_0 libffi conda-forge/osx-arm64::libffi-3.4.2-h3422bc3_5 libsqlite conda-forge/osx-arm64::libsqlite-3.45.3-h091b4b1_0 libzlib conda-forge/osx-arm64::libzlib-1.3.1-hfb2fe0b_1 ncurses conda-forge/osx-arm64::ncurses-6.5-hb89a1cb_0 openssl conda-forge/osx-arm64::openssl-3.3.1-hfb2fe0b_0 pip conda-forge/noarch::pip-24.0-pyhd8ed1ab_0 python conda-forge/osx-arm64::python-3.9.12-h14b404e_1_cpython readline conda-forge/osx-arm64::readline-8.2-h92ec313_1 setuptools conda-forge/noarch::setuptools-70.0.0-pyhd8ed1ab_0 sqlite conda-forge/osx-arm64::sqlite-3.45.3-hf2abe2d_0 tk conda-forge/osx-arm64::tk-8.6.13-h5083fa2_1 tzdata conda-forge/noarch::tzdata-2024a-h0c530f3_0 wheel conda-forge/noarch::wheel-0.43.0-pyhd8ed1ab_1 xz conda-forge/osx-arm64::xz-5.2.6-h57fd34a_0 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 4.12.0 latest version: 24.5.0 Please update conda by running $ conda update -n base -c defaults conda # All requested packages already installed. Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve. Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 4.12.0 latest version: 24.5.0 Please update conda by running $ conda update -n base -c defaults conda ## Package Plan ## environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo added / updated specs: - pandas=1.4.3 - python-dateutil=2.8.2 - python=3.9.12 - pytz=2022.2.1 The following NEW packages will be INSTALLED: libblas conda-forge/osx-arm64::libblas-3.9.0-22_osxarm64_openblas libcblas conda-forge/osx-arm64::libcblas-3.9.0-22_osxarm64_openblas libcxx conda-forge/osx-arm64::libcxx-17.0.6-h5f092b4_0 libgfortran conda-forge/osx-arm64::libgfortran-5.0.0-13_2_0_hd922786_3 libgfortran5 conda-forge/osx-arm64::libgfortran5-13.2.0-hf226fd6_3 liblapack conda-forge/osx-arm64::liblapack-3.9.0-22_osxarm64_openblas libopenblas conda-forge/osx-arm64::libopenblas-0.3.27-openmp_h6c19121_0 llvm-openmp conda-forge/osx-arm64::llvm-openmp-18.1.7-hde57baf_0 numpy conda-forge/osx-arm64::numpy-1.26.4-py39h7aa2656_0 pandas conda-forge/osx-arm64::pandas-1.4.3-py39hd2dba81_0 python-dateutil conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0 python_abi conda-forge/osx-arm64::python_abi-3.9-4_cp39 pytz conda-forge/noarch::pytz-2022.2.1-pyhd8ed1ab_0 six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source. Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo added / updated specs: - python=3.9.12 The following NEW packages will be INSTALLED: bzip2 conda-forge/osx-arm64::bzip2-1.0.8-h93a5062_5 ca-certificates conda-forge/osx-arm64::ca-certificates-2024.6.2-hf0a4a13_0 libffi conda-forge/osx-arm64::libffi-3.4.2-h3422bc3_5 libsqlite conda-forge/osx-arm64::libsqlite-3.45.3-h091b4b1_0 libzlib conda-forge/osx-arm64::libzlib-1.3.1-hfb2fe0b_1 ncurses conda-forge/osx-arm64::ncurses-6.5-hb89a1cb_0 openssl conda-forge/osx-arm64::openssl-3.3.1-hfb2fe0b_0 pip conda-forge/noarch::pip-24.0-pyhd8ed1ab_0 python conda-forge/osx-arm64::python-3.9.12-h14b404e_1_cpython readline conda-forge/osx-arm64::readline-8.2-h92ec313_1 setuptools conda-forge/noarch::setuptools-70.0.0-pyhd8ed1ab_0 sqlite conda-forge/osx-arm64::sqlite-3.45.3-hf2abe2d_0 tk conda-forge/osx-arm64::tk-8.6.13-h5083fa2_1 tzdata conda-forge/noarch::tzdata-2024a-h0c530f3_0 wheel conda-forge/noarch::wheel-0.43.0-pyhd8ed1ab_1 xz conda-forge/osx-arm64::xz-5.2.6-h57fd34a_0 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 4.12.0 latest version: 24.5.0 Please update conda by running $ conda update -n base -c defaults conda # All requested packages already installed. Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve. Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 4.12.0 latest version: 24.5.0 Please update conda by running $ conda update -n base -c defaults conda ## Package Plan ## environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo added / updated specs: - pandas=1.4.2 - python-dateutil=2.8.1 - python=3.9.12 - pytz=2022.1 The following NEW packages will be INSTALLED: libblas conda-forge/osx-arm64::libblas-3.9.0-22_osxarm64_openblas libcblas conda-forge/osx-arm64::libcblas-3.9.0-22_osxarm64_openblas libcxx conda-forge/osx-arm64::libcxx-17.0.6-h5f092b4_0 libgfortran conda-forge/osx-arm64::libgfortran-5.0.0-13_2_0_hd922786_3 libgfortran5 conda-forge/osx-arm64::libgfortran5-13.2.0-hf226fd6_3 liblapack conda-forge/osx-arm64::liblapack-3.9.0-22_osxarm64_openblas libopenblas conda-forge/osx-arm64::libopenblas-0.3.27-openmp_h6c19121_0 llvm-openmp conda-forge/osx-arm64::llvm-openmp-18.1.7-hde57baf_0 numpy conda-forge/osx-arm64::numpy-1.26.4-py39h7aa2656_0 pandas conda-forge/osx-arm64::pandas-1.4.2-py39hd2dba81_2 python-dateutil conda-forge/noarch::python-dateutil-2.8.1-py_0 python_abi conda-forge/osx-arm64::python_abi-3.9-4_cp39 pytz conda-forge/noarch::pytz-2022.1-pyhd8ed1ab_0 six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source. Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo added / updated specs: - python=3.9.12 The following NEW packages will be INSTALLED: bzip2 conda-forge/osx-arm64::bzip2-1.0.8-h93a5062_5 ca-certificates conda-forge/osx-arm64::ca-certificates-2024.6.2-hf0a4a13_0 libffi conda-forge/osx-arm64::libffi-3.4.2-h3422bc3_5 libsqlite conda-forge/osx-arm64::libsqlite-3.45.3-h091b4b1_0 libzlib conda-forge/osx-arm64::libzlib-1.3.1-hfb2fe0b_1 ncurses conda-forge/osx-arm64::ncurses-6.5-hb89a1cb_0 openssl conda-forge/osx-arm64::openssl-3.3.1-hfb2fe0b_0 pip conda-forge/noarch::pip-24.0-pyhd8ed1ab_0 python conda-forge/osx-arm64::python-3.9.12-h14b404e_1_cpython readline conda-forge/osx-arm64::readline-8.2-h92ec313_1 setuptools conda-forge/noarch::setuptools-70.0.0-pyhd8ed1ab_0 sqlite conda-forge/osx-arm64::sqlite-3.45.3-hf2abe2d_0 tk conda-forge/osx-arm64::tk-8.6.13-h5083fa2_1 tzdata conda-forge/noarch::tzdata-2024a-h0c530f3_0 wheel conda-forge/noarch::wheel-0.43.0-pyhd8ed1ab_1 xz conda-forge/osx-arm64::xz-5.2.6-h57fd34a_0 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 4.12.0 latest version: 24.5.0 Please update conda by running $ conda update -n base -c defaults conda # All requested packages already installed. Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 4.12.0 latest version: 24.5.0 Please update conda by running $ conda update -n base -c defaults conda ## Package Plan ## environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo added / updated specs: - python-dateutil=2.8.1 - python=3.9.12 - pytz=2022.1 The following NEW packages will be INSTALLED: python-dateutil conda-forge/noarch::python-dateutil-2.8.1-py_0 pytz conda-forge/noarch::pytz-2022.1-pyhd8ed1ab_0 six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Collecting pandas==1.4.2 Using cached pandas-1.4.2-cp39-cp39-macosx_11_0_arm64.whl.metadata (12 kB) Requirement already satisfied: python-dateutil>=2.8.1 in ./install-test-client/thingo/lib/python3.9/site-packages (from pandas==1.4.2) (2.8.1) Requirement already satisfied: pytz>=2020.1 in ./install-test-client/thingo/lib/python3.9/site-packages (from pandas==1.4.2) (2022.1) Collecting numpy>=1.20.0 (from pandas==1.4.2) Using cached numpy-1.26.4-cp39-cp39-macosx_11_0_arm64.whl.metadata (61 kB) Requirement already satisfied: six>=1.5 in ./install-test-client/thingo/lib/python3.9/site-packages (from python-dateutil>=2.8.1->pandas==1.4.2) (1.16.0) Using cached pandas-1.4.2-cp39-cp39-macosx_11_0_arm64.whl (10.1 MB) Using cached numpy-1.26.4-cp39-cp39-macosx_11_0_arm64.whl (14.0 MB) Installing collected packages: numpy, pandas Successfully installed numpy-1.26.4 pandas-1.4.2 Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source. Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo added / updated specs: - python=3.9.12 The following NEW packages will be INSTALLED: bzip2 conda-forge/osx-arm64::bzip2-1.0.8-h93a5062_5 ca-certificates conda-forge/osx-arm64::ca-certificates-2024.6.2-hf0a4a13_0 libffi conda-forge/osx-arm64::libffi-3.4.2-h3422bc3_5 libsqlite conda-forge/osx-arm64::libsqlite-3.45.3-h091b4b1_0 libzlib conda-forge/osx-arm64::libzlib-1.3.1-hfb2fe0b_1 ncurses conda-forge/osx-arm64::ncurses-6.5-hb89a1cb_0 openssl conda-forge/osx-arm64::openssl-3.3.1-hfb2fe0b_0 pip conda-forge/noarch::pip-24.0-pyhd8ed1ab_0 python conda-forge/osx-arm64::python-3.9.12-h14b404e_1_cpython readline conda-forge/osx-arm64::readline-8.2-h92ec313_1 setuptools conda-forge/noarch::setuptools-70.0.0-pyhd8ed1ab_0 sqlite conda-forge/osx-arm64::sqlite-3.45.3-hf2abe2d_0 tk conda-forge/osx-arm64::tk-8.6.13-h5083fa2_1 tzdata conda-forge/noarch::tzdata-2024a-h0c530f3_0 wheel conda-forge/noarch::wheel-0.43.0-pyhd8ed1ab_1 xz conda-forge/osx-arm64::xz-5.2.6-h57fd34a_0 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 4.12.0 latest version: 24.5.0 Please update conda by running $ conda update -n base -c defaults conda # All requested packages already installed. Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 4.12.0 latest version: 24.5.0 Please update conda by running $ conda update -n base -c defaults conda # All requested packages already installed. Processing /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/basilisk/example/inst/test_dummy Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Building wheels for collected packages: test_dummy Building wheel for test_dummy (setup.py): started Building wheel for test_dummy (setup.py): finished with status 'done' Created wheel for test_dummy: filename=test_dummy-0.1-py3-none-any.whl size=1281 sha256=c8b4f68541199bd88a2d1372f9134e7489819ea82229ec50b86adddec8277086 Stored in directory: /private/tmp/pip-ephem-wheel-cache-y2hwvp2o/wheels/6f/cc/56/b33becf13885d14402abe4a5cfb803e0ce28459cb5f2bd59a3 Successfully built test_dummy Installing collected packages: test_dummy Successfully installed test_dummy-0.1 Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source. Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo added / updated specs: - python=3.9.12 The following NEW packages will be INSTALLED: bzip2 conda-forge/osx-arm64::bzip2-1.0.8-h93a5062_5 ca-certificates conda-forge/osx-arm64::ca-certificates-2024.6.2-hf0a4a13_0 libffi conda-forge/osx-arm64::libffi-3.4.2-h3422bc3_5 libsqlite conda-forge/osx-arm64::libsqlite-3.45.3-h091b4b1_0 libzlib conda-forge/osx-arm64::libzlib-1.3.1-hfb2fe0b_1 ncurses conda-forge/osx-arm64::ncurses-6.5-hb89a1cb_0 openssl conda-forge/osx-arm64::openssl-3.3.1-hfb2fe0b_0 pip conda-forge/noarch::pip-24.0-pyhd8ed1ab_0 python conda-forge/osx-arm64::python-3.9.12-h14b404e_1_cpython readline conda-forge/osx-arm64::readline-8.2-h92ec313_1 setuptools conda-forge/noarch::setuptools-70.0.0-pyhd8ed1ab_0 sqlite conda-forge/osx-arm64::sqlite-3.45.3-hf2abe2d_0 tk conda-forge/osx-arm64::tk-8.6.13-h5083fa2_1 tzdata conda-forge/noarch::tzdata-2024a-h0c530f3_0 wheel conda-forge/noarch::wheel-0.43.0-pyhd8ed1ab_1 xz conda-forge/osx-arm64::xz-5.2.6-h57fd34a_0 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 4.12.0 latest version: 24.5.0 Please update conda by running $ conda update -n base -c defaults conda # All requested packages already installed. Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve. Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve. PackagesNotFoundError: The following packages are not available from current channels: - whheeeeeeeeeeeeeeeeee=0.0.1 Current channels: - https://conda.anaconda.org/conda-forge/osx-arm64 - https://conda.anaconda.org/conda-forge/noarch - https://repo.anaconda.com/pkgs/main/osx-arm64 - https://repo.anaconda.com/pkgs/main/noarch - https://repo.anaconda.com/pkgs/r/osx-arm64 - https://repo.anaconda.com/pkgs/r/noarch To search for alternate channels that may provide the conda package you're looking for, navigate to https://anaconda.org and use the search bar at the top of the page. trying URL 'https://repo.anaconda.com/miniconda/Miniconda3-py39_4.12.0-MacOSX-arm64.sh' Content type 'application/x-sh' length 54697912 bytes (52.2 MB) ================================================== downloaded 52.2 MB PREFIX=/tmp/RtmpWkIowS/file23ce7e8a4d0c/1.17.0/0 Unpacking payload ... 0%| | 0/35 [00:00<?, ?it/s] Extracting : cffi-1.15.0-py39h22df2f2_1.conda: 0%| | 0/35 [00:00<?, ?it/s] Extracting : cffi-1.15.0-py39h22df2f2_1.conda: 3%|▎ | 1/35 [00:00<00:15, 2.13it/s] Extracting : sqlite-3.38.3-h1058600_0.conda: 3%|▎ | 1/35 [00:00<00:15, 2.13it/s] Extracting : cryptography-37.0.1-py39h834c97f_0.conda: 6%|▌ | 2/35 [00:00<00:15, 2.13it/s] Extracting : cryptography-37.0.1-py39h834c97f_0.conda: 9%|▊ | 3/35 [00:00<00:09, 3.52it/s] Extracting : requests-2.27.1-pyhd3eb1b0_0.conda: 9%|▊ | 3/35 [00:00<00:09, 3.52it/s] Extracting : python.app-3-py39h1a28f6b_0.conda: 11%|█▏ | 4/35 [00:00<00:08, 3.52it/s] Extracting : zlib-1.2.12-h5a0b063_2.conda: 14%|█▍ | 5/35 [00:00<00:08, 3.52it/s] Extracting : pysocks-1.7.1-py39hca03da5_0.conda: 17%|█▋ | 6/35 [00:00<00:08, 3.52it/s] Extracting : tk-8.6.11-hb8d0fd4_1.conda: 20%|██ | 7/35 [00:01<00:07, 3.52it/s] Extracting : tk-8.6.11-hb8d0fd4_1.conda: 23%|██▎ | 8/35 [00:01<00:03, 8.15it/s] Extracting : python-3.9.12-hbdb9e5c_0.conda: 23%|██▎ | 8/35 [00:02<00:03, 8.15it/s] Extracting : python-3.9.12-hbdb9e5c_0.conda: 26%|██▌ | 9/35 [00:02<00:06, 3.94it/s] Extracting : certifi-2022.5.18.1-py39hca03da5_0.conda: 26%|██▌ | 9/35 [00:02<00:06, 3.94it/s] Extracting : ca-certificates-2022.4.26-hca03da5_0.conda: 29%|██▊ | 10/35 [00:02<00:06, 3.94it/s] Extracting : six-1.16.0-pyhd3eb1b0_1.conda: 31%|███▏ | 11/35 [00:02<00:06, 3.94it/s] Extracting : readline-8.1.2-h1a28f6b_1.conda: 34%|███▍ | 12/35 [00:02<00:05, 3.94it/s] Extracting : xz-5.2.5-h1a28f6b_1.conda: 37%|███▋ | 13/35 [00:02<00:05, 3.94it/s] Extracting : wheel-0.37.1-pyhd3eb1b0_0.conda: 40%|████ | 14/35 [00:02<00:05, 3.94it/s] Extracting : charset-normalizer-2.0.4-pyhd3eb1b0_0.conda: 43%|████▎ | 15/35 [00:02<00:05, 3.94it/s] Extracting : brotlipy-0.7.0-py39h1a28f6b_1002.conda: 46%|████▌ | 16/35 [00:02<00:04, 3.94it/s] Extracting : pycosat-0.6.3-py39h1a28f6b_0.conda: 49%|████▊ | 17/35 [00:02<00:04, 3.94it/s] Extracting : ncurses-6.3-h1a28f6b_2.conda: 51%|█████▏ | 18/35 [00:02<00:04, 3.94it/s] Extracting : libcxx-12.0.0-hf6beb65_1.conda: 54%|█████▍ | 19/35 [00:02<00:04, 3.94it/s] Extracting : pycparser-2.21-pyhd3eb1b0_0.conda: 57%|█████▋ | 20/35 [00:02<00:03, 3.94it/s] Extracting : libffi-3.4.2-hc377ac9_2.conda: 60%|██████ | 21/35 [00:02<00:03, 3.94it/s] Extracting : pyopenssl-22.0.0-pyhd3eb1b0_0.conda: 63%|██████▎ | 22/35 [00:02<00:03, 3.94it/s] Extracting : conda-4.12.0-py39hca03da5_0.conda: 66%|██████▌ | 23/35 [00:02<00:03, 3.94it/s] Extracting : conda-4.12.0-py39hca03da5_0.conda: 69%|██████▊ | 24/35 [00:02<00:00, 14.11it/s] Extracting : urllib3-1.26.9-py39hca03da5_0.conda: 69%|██████▊ | 24/35 [00:02<00:00, 14.11it/s] Extracting : openssl-1.1.1o-h1a28f6b_0.conda: 71%|███████▏ | 25/35 [00:02<00:00, 14.11it/s] Extracting : tqdm-4.64.0-py39hca03da5_0.conda: 74%|███████▍ | 26/35 [00:02<00:00, 14.11it/s] Extracting : pip-21.2.4-py39hca03da5_0.conda: 77%|███████▋ | 27/35 [00:02<00:00, 14.11it/s] Extracting : conda-content-trust-0.1.1-pyhd3eb1b0_0.conda: 80%|████████ | 28/35 [00:02<00:00, 14.11it/s] Extracting : idna-3.3-pyhd3eb1b0_0.conda: 83%|████████▎ | 29/35 [00:02<00:00, 14.11it/s] Extracting : conda-package-handling-1.8.1-py39h1a28f6b_0.conda: 86%|████████▌ | 30/35 [00:02<00:00, 14.11it/s] Extracting : tzdata-2022a-hda174b7_0.conda: 89%|████████▊ | 31/35 [00:02<00:00, 14.11it/s] Extracting : yaml-0.2.5-h1a28f6b_0.conda: 91%|█████████▏| 32/35 [00:02<00:00, 14.11it/s] Extracting : setuptools-61.2.0-py39hca03da5_0.conda: 94%|█████████▍| 33/35 [00:02<00:00, 14.11it/s] Extracting : ruamel_yaml-0.15.100-py39h1a28f6b_0.conda: 97%|█████████▋| 34/35 [00:02<00:00, 14.11it/s] Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /tmp/RtmpWkIowS/file23ce7e8a4d0c/1.17.0/0 added / updated specs: - brotlipy==0.7.0=py39h1a28f6b_1002 - ca-certificates==2022.4.26=hca03da5_0 - certifi==2022.5.18.1=py39hca03da5_0 - cffi==1.15.0=py39h22df2f2_1 - charset-normalizer==2.0.4=pyhd3eb1b0_0 - conda-content-trust==0.1.1=pyhd3eb1b0_0 - conda-package-handling==1.8.1=py39h1a28f6b_0 - conda==4.12.0=py39hca03da5_0 - cryptography==37.0.1=py39h834c97f_0 - idna==3.3=pyhd3eb1b0_0 - libcxx==12.0.0=hf6beb65_1 - libffi==3.4.2=hc377ac9_2 - ncurses==6.3=h1a28f6b_2 - openssl==1.1.1o=h1a28f6b_0 - pip==21.2.4=py39hca03da5_0 - pycosat==0.6.3=py39h1a28f6b_0 - pycparser==2.21=pyhd3eb1b0_0 - pyopenssl==22.0.0=pyhd3eb1b0_0 - pysocks==1.7.1=py39hca03da5_0 - python.app==3=py39h1a28f6b_0 - python==3.9.12=hbdb9e5c_0 - readline==8.1.2=h1a28f6b_1 - requests==2.27.1=pyhd3eb1b0_0 - ruamel_yaml==0.15.100=py39h1a28f6b_0 - setuptools==61.2.0=py39hca03da5_0 - six==1.16.0=pyhd3eb1b0_1 - sqlite==3.38.3=h1058600_0 - tk==8.6.11=hb8d0fd4_1 - tqdm==4.64.0=py39hca03da5_0 - tzdata==2022a=hda174b7_0 - urllib3==1.26.9=py39hca03da5_0 - wheel==0.37.1=pyhd3eb1b0_0 - xz==5.2.5=h1a28f6b_1 - yaml==0.2.5=h1a28f6b_0 - zlib==1.2.12=h5a0b063_2 The following NEW packages will be INSTALLED: brotlipy pkgs/main/osx-arm64::brotlipy-0.7.0-py39h1a28f6b_1002 ca-certificates pkgs/main/osx-arm64::ca-certificates-2022.4.26-hca03da5_0 certifi pkgs/main/osx-arm64::certifi-2022.5.18.1-py39hca03da5_0 cffi pkgs/main/osx-arm64::cffi-1.15.0-py39h22df2f2_1 charset-normalizer pkgs/main/noarch::charset-normalizer-2.0.4-pyhd3eb1b0_0 conda pkgs/main/osx-arm64::conda-4.12.0-py39hca03da5_0 conda-content-tru~ pkgs/main/noarch::conda-content-trust-0.1.1-pyhd3eb1b0_0 conda-package-han~ pkgs/main/osx-arm64::conda-package-handling-1.8.1-py39h1a28f6b_0 cryptography pkgs/main/osx-arm64::cryptography-37.0.1-py39h834c97f_0 idna pkgs/main/noarch::idna-3.3-pyhd3eb1b0_0 libcxx pkgs/main/osx-arm64::libcxx-12.0.0-hf6beb65_1 libffi pkgs/main/osx-arm64::libffi-3.4.2-hc377ac9_2 ncurses pkgs/main/osx-arm64::ncurses-6.3-h1a28f6b_2 openssl pkgs/main/osx-arm64::openssl-1.1.1o-h1a28f6b_0 pip pkgs/main/osx-arm64::pip-21.2.4-py39hca03da5_0 pycosat pkgs/main/osx-arm64::pycosat-0.6.3-py39h1a28f6b_0 pycparser pkgs/main/noarch::pycparser-2.21-pyhd3eb1b0_0 pyopenssl pkgs/main/noarch::pyopenssl-22.0.0-pyhd3eb1b0_0 pysocks pkgs/main/osx-arm64::pysocks-1.7.1-py39hca03da5_0 python pkgs/main/osx-arm64::python-3.9.12-hbdb9e5c_0 python.app pkgs/main/osx-arm64::python.app-3-py39h1a28f6b_0 readline pkgs/main/osx-arm64::readline-8.1.2-h1a28f6b_1 requests pkgs/main/noarch::requests-2.27.1-pyhd3eb1b0_0 ruamel_yaml pkgs/main/osx-arm64::ruamel_yaml-0.15.100-py39h1a28f6b_0 setuptools pkgs/main/osx-arm64::setuptools-61.2.0-py39hca03da5_0 six pkgs/main/noarch::six-1.16.0-pyhd3eb1b0_1 sqlite pkgs/main/osx-arm64::sqlite-3.38.3-h1058600_0 tk pkgs/main/osx-arm64::tk-8.6.11-hb8d0fd4_1 tqdm pkgs/main/osx-arm64::tqdm-4.64.0-py39hca03da5_0 tzdata pkgs/main/noarch::tzdata-2022a-hda174b7_0 urllib3 pkgs/main/osx-arm64::urllib3-1.26.9-py39hca03da5_0 wheel pkgs/main/noarch::wheel-0.37.1-pyhd3eb1b0_0 xz pkgs/main/osx-arm64::xz-5.2.5-h1a28f6b_1 yaml pkgs/main/osx-arm64::yaml-0.2.5-h1a28f6b_0 zlib pkgs/main/osx-arm64::zlib-1.2.12-h5a0b063_2 Preparing transaction: ...working... done Executing transaction: ...working... done installation finished. Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source. Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /private/tmp/RtmpWkIowS/file23ce7e8a4d0c/1.17.0/basilisk.utils/1.17.0/test added / updated specs: - python=3.9.12 The following packages will be downloaded: package | build ---------------------------|----------------- bzip2-1.0.8 | h93a5062_5 119 KB conda-forge ca-certificates-2024.6.2 | hf0a4a13_0 153 KB conda-forge libffi-3.4.2 | h3422bc3_5 38 KB conda-forge libsqlite-3.45.3 | h091b4b1_0 805 KB conda-forge libzlib-1.3.1 | hfb2fe0b_1 46 KB conda-forge ncurses-6.5 | hb89a1cb_0 776 KB conda-forge openssl-3.3.1 | hfb2fe0b_0 2.8 MB conda-forge pip-24.0 | pyhd8ed1ab_0 1.3 MB conda-forge python-3.9.12 |h14b404e_1_cpython 12.3 MB conda-forge readline-8.2 | h92ec313_1 244 KB conda-forge setuptools-70.0.0 | pyhd8ed1ab_0 472 KB conda-forge sqlite-3.45.3 | hf2abe2d_0 793 KB conda-forge tk-8.6.13 | h5083fa2_1 3.0 MB conda-forge tzdata-2024a | h0c530f3_0 117 KB conda-forge wheel-0.43.0 | pyhd8ed1ab_1 57 KB conda-forge xz-5.2.6 | h57fd34a_0 230 KB conda-forge ------------------------------------------------------------ Total: 23.2 MB The following NEW packages will be INSTALLED: bzip2 conda-forge/osx-arm64::bzip2-1.0.8-h93a5062_5 ca-certificates conda-forge/osx-arm64::ca-certificates-2024.6.2-hf0a4a13_0 libffi conda-forge/osx-arm64::libffi-3.4.2-h3422bc3_5 libsqlite conda-forge/osx-arm64::libsqlite-3.45.3-h091b4b1_0 libzlib conda-forge/osx-arm64::libzlib-1.3.1-hfb2fe0b_1 ncurses conda-forge/osx-arm64::ncurses-6.5-hb89a1cb_0 openssl conda-forge/osx-arm64::openssl-3.3.1-hfb2fe0b_0 pip conda-forge/noarch::pip-24.0-pyhd8ed1ab_0 python conda-forge/osx-arm64::python-3.9.12-h14b404e_1_cpython readline conda-forge/osx-arm64::readline-8.2-h92ec313_1 setuptools conda-forge/noarch::setuptools-70.0.0-pyhd8ed1ab_0 sqlite conda-forge/osx-arm64::sqlite-3.45.3-hf2abe2d_0 tk conda-forge/osx-arm64::tk-8.6.13-h5083fa2_1 tzdata conda-forge/noarch::tzdata-2024a-h0c530f3_0 wheel conda-forge/noarch::wheel-0.43.0-pyhd8ed1ab_1 xz conda-forge/osx-arm64::xz-5.2.6-h57fd34a_0 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 4.12.0 latest version: 24.5.0 Please update conda by running $ conda update -n base -c defaults conda # All requested packages already installed. Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve. Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 4.12.0 latest version: 24.5.0 Please update conda by running $ conda update -n base -c defaults conda ## Package Plan ## environment location: /private/tmp/RtmpWkIowS/file23ce7e8a4d0c/1.17.0/basilisk.utils/1.17.0/test added / updated specs: - pandas=1.4.3 - python=3.9.12 The following packages will be downloaded: package | build ---------------------------|----------------- libblas-3.9.0 |22_osxarm64_openblas 14 KB conda-forge libcblas-3.9.0 |22_osxarm64_openblas 14 KB conda-forge libcxx-17.0.6 | h5f092b4_0 1.2 MB conda-forge libgfortran-5.0.0 |13_2_0_hd922786_3 108 KB conda-forge libgfortran5-13.2.0 | hf226fd6_3 974 KB conda-forge liblapack-3.9.0 |22_osxarm64_openblas 14 KB conda-forge libopenblas-0.3.27 |openmp_h6c19121_0 2.8 MB conda-forge llvm-openmp-18.1.7 | hde57baf_0 270 KB conda-forge numpy-1.26.4 | py39h7aa2656_0 5.2 MB conda-forge pandas-1.4.3 | py39hd2dba81_0 11.5 MB conda-forge python-dateutil-2.9.0 | pyhd8ed1ab_0 218 KB conda-forge python_abi-3.9 | 4_cp39 6 KB conda-forge pytz-2024.1 | pyhd8ed1ab_0 184 KB conda-forge six-1.16.0 | pyh6c4a22f_0 14 KB conda-forge ------------------------------------------------------------ Total: 22.5 MB The following NEW packages will be INSTALLED: libblas conda-forge/osx-arm64::libblas-3.9.0-22_osxarm64_openblas libcblas conda-forge/osx-arm64::libcblas-3.9.0-22_osxarm64_openblas libcxx conda-forge/osx-arm64::libcxx-17.0.6-h5f092b4_0 libgfortran conda-forge/osx-arm64::libgfortran-5.0.0-13_2_0_hd922786_3 libgfortran5 conda-forge/osx-arm64::libgfortran5-13.2.0-hf226fd6_3 liblapack conda-forge/osx-arm64::liblapack-3.9.0-22_osxarm64_openblas libopenblas conda-forge/osx-arm64::libopenblas-0.3.27-openmp_h6c19121_0 llvm-openmp conda-forge/osx-arm64::llvm-openmp-18.1.7-hde57baf_0 numpy conda-forge/osx-arm64::numpy-1.26.4-py39h7aa2656_0 pandas conda-forge/osx-arm64::pandas-1.4.3-py39hd2dba81_0 python-dateutil conda-forge/noarch::python-dateutil-2.9.0-pyhd8ed1ab_0 python_abi conda-forge/osx-arm64::python_abi-3.9-4_cp39 pytz conda-forge/noarch::pytz-2024.1-pyhd8ed1ab_0 six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0 Downloading and Extracting Packages libblas-3.9.0 | 14 KB | | 0% libblas-3.9.0 | 14 KB | ########## | 100% libblas-3.9.0 | 14 KB | ########## | 100% six-1.16.0 | 14 KB | | 0% six-1.16.0 | 14 KB | ########## | 100% libgfortran5-13.2.0 | 974 KB | | 0% libgfortran5-13.2.0 | 974 KB | ######5 | 66% libgfortran5-13.2.0 | 974 KB | ########## | 100% python_abi-3.9 | 6 KB | | 0% python_abi-3.9 | 6 KB | ########## | 100% python_abi-3.9 | 6 KB | ########## | 100% llvm-openmp-18.1.7 | 270 KB | | 0% llvm-openmp-18.1.7 | 270 KB | ########## | 100% llvm-openmp-18.1.7 | 270 KB | ########## | 100% libopenblas-0.3.27 | 2.8 MB | | 0% libopenblas-0.3.27 | 2.8 MB | ########## | 100% libopenblas-0.3.27 | 2.8 MB | ########## | 100% libcblas-3.9.0 | 14 KB | | 0% libcblas-3.9.0 | 14 KB | ########## | 100% libcblas-3.9.0 | 14 KB | ########## | 100% liblapack-3.9.0 | 14 KB | | 0% liblapack-3.9.0 | 14 KB | ########## | 100% liblapack-3.9.0 | 14 KB | ########## | 100% numpy-1.26.4 | 5.2 MB | | 0% numpy-1.26.4 | 5.2 MB | #####1 | 52% numpy-1.26.4 | 5.2 MB | ########## | 100% pandas-1.4.3 | 11.5 MB | | 0% pandas-1.4.3 | 11.5 MB | | 0% pandas-1.4.3 | 11.5 MB | ## | 21% pandas-1.4.3 | 11.5 MB | ##### | 50% pandas-1.4.3 | 11.5 MB | ########## | 100% pandas-1.4.3 | 11.5 MB | ########## | 100% pytz-2024.1 | 184 KB | | 0% pytz-2024.1 | 184 KB | ########## | 100% pytz-2024.1 | 184 KB | ########## | 100% python-dateutil-2.9. | 218 KB | | 0% python-dateutil-2.9. | 218 KB | ########## | 100% python-dateutil-2.9. | 218 KB | ########## | 100% libcxx-17.0.6 | 1.2 MB | | 0% libcxx-17.0.6 | 1.2 MB | ########## | 100% libcxx-17.0.6 | 1.2 MB | ########## | 100% libgfortran-5.0.0 | 108 KB | | 0% libgfortran-5.0.0 | 108 KB | ########## | 100% libgfortran-5.0.0 | 108 KB | ########## | 100% Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source. Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/locality/1.17.0 added / updated specs: - python=3.9.12 The following NEW packages will be INSTALLED: bzip2 conda-forge/osx-arm64::bzip2-1.0.8-h93a5062_5 ca-certificates conda-forge/osx-arm64::ca-certificates-2024.6.2-hf0a4a13_0 libffi conda-forge/osx-arm64::libffi-3.4.2-h3422bc3_5 libsqlite conda-forge/osx-arm64::libsqlite-3.45.3-h091b4b1_0 libzlib conda-forge/osx-arm64::libzlib-1.3.1-hfb2fe0b_1 ncurses conda-forge/osx-arm64::ncurses-6.5-hb89a1cb_0 openssl conda-forge/osx-arm64::openssl-3.3.1-hfb2fe0b_0 pip conda-forge/noarch::pip-24.0-pyhd8ed1ab_0 python conda-forge/osx-arm64::python-3.9.12-h14b404e_1_cpython readline conda-forge/osx-arm64::readline-8.2-h92ec313_1 setuptools conda-forge/noarch::setuptools-70.0.0-pyhd8ed1ab_0 sqlite conda-forge/osx-arm64::sqlite-3.45.3-hf2abe2d_0 tk conda-forge/osx-arm64::tk-8.6.13-h5083fa2_1 tzdata conda-forge/noarch::tzdata-2024a-h0c530f3_0 wheel conda-forge/noarch::wheel-0.43.0-pyhd8ed1ab_1 xz conda-forge/osx-arm64::xz-5.2.6-h57fd34a_0 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 4.12.0 latest version: 24.5.0 Please update conda by running $ conda update -n base -c defaults conda # All requested packages already installed. Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve. Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 4.12.0 latest version: 24.5.0 Please update conda by running $ conda update -n base -c defaults conda ## Package Plan ## environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/locality/1.17.0 added / updated specs: - pandas=1.4.3 - python-dateutil=2.8.2 - python=3.9.12 - pytz=2022.2.1 The following NEW packages will be INSTALLED: libblas conda-forge/osx-arm64::libblas-3.9.0-22_osxarm64_openblas libcblas conda-forge/osx-arm64::libcblas-3.9.0-22_osxarm64_openblas libcxx conda-forge/osx-arm64::libcxx-17.0.6-h5f092b4_0 libgfortran conda-forge/osx-arm64::libgfortran-5.0.0-13_2_0_hd922786_3 libgfortran5 conda-forge/osx-arm64::libgfortran5-13.2.0-hf226fd6_3 liblapack conda-forge/osx-arm64::liblapack-3.9.0-22_osxarm64_openblas libopenblas conda-forge/osx-arm64::libopenblas-0.3.27-openmp_h6c19121_0 llvm-openmp conda-forge/osx-arm64::llvm-openmp-18.1.7-hde57baf_0 numpy conda-forge/osx-arm64::numpy-1.26.4-py39h7aa2656_0 pandas conda-forge/osx-arm64::pandas-1.4.3-py39hd2dba81_0 python-dateutil conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0 python_abi conda-forge/osx-arm64::python_abi-3.9-4_cp39 pytz conda-forge/noarch::pytz-2022.2.1-pyhd8ed1ab_0 six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source. Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_A added / updated specs: - python=3.9.12 The following NEW packages will be INSTALLED: bzip2 conda-forge/osx-arm64::bzip2-1.0.8-h93a5062_5 ca-certificates conda-forge/osx-arm64::ca-certificates-2024.6.2-hf0a4a13_0 libffi conda-forge/osx-arm64::libffi-3.4.2-h3422bc3_5 libsqlite conda-forge/osx-arm64::libsqlite-3.45.3-h091b4b1_0 libzlib conda-forge/osx-arm64::libzlib-1.3.1-hfb2fe0b_1 ncurses conda-forge/osx-arm64::ncurses-6.5-hb89a1cb_0 openssl conda-forge/osx-arm64::openssl-3.3.1-hfb2fe0b_0 pip conda-forge/noarch::pip-24.0-pyhd8ed1ab_0 python conda-forge/osx-arm64::python-3.9.12-h14b404e_1_cpython readline conda-forge/osx-arm64::readline-8.2-h92ec313_1 setuptools conda-forge/noarch::setuptools-70.0.0-pyhd8ed1ab_0 sqlite conda-forge/osx-arm64::sqlite-3.45.3-hf2abe2d_0 tk conda-forge/osx-arm64::tk-8.6.13-h5083fa2_1 tzdata conda-forge/noarch::tzdata-2024a-h0c530f3_0 wheel conda-forge/noarch::wheel-0.43.0-pyhd8ed1ab_1 xz conda-forge/osx-arm64::xz-5.2.6-h57fd34a_0 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 4.12.0 latest version: 24.5.0 Please update conda by running $ conda update -n base -c defaults conda # All requested packages already installed. Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve. Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 4.12.0 latest version: 24.5.0 Please update conda by running $ conda update -n base -c defaults conda ## Package Plan ## environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_A added / updated specs: - pandas=1.4.3 - python-dateutil=2.8.2 - python=3.9.12 - pytz=2022.2.1 The following NEW packages will be INSTALLED: libblas conda-forge/osx-arm64::libblas-3.9.0-22_osxarm64_openblas libcblas conda-forge/osx-arm64::libcblas-3.9.0-22_osxarm64_openblas libcxx conda-forge/osx-arm64::libcxx-17.0.6-h5f092b4_0 libgfortran conda-forge/osx-arm64::libgfortran-5.0.0-13_2_0_hd922786_3 libgfortran5 conda-forge/osx-arm64::libgfortran5-13.2.0-hf226fd6_3 liblapack conda-forge/osx-arm64::liblapack-3.9.0-22_osxarm64_openblas libopenblas conda-forge/osx-arm64::libopenblas-0.3.27-openmp_h6c19121_0 llvm-openmp conda-forge/osx-arm64::llvm-openmp-18.1.7-hde57baf_0 numpy conda-forge/osx-arm64::numpy-1.26.4-py39h7aa2656_0 pandas conda-forge/osx-arm64::pandas-1.4.3-py39hd2dba81_0 python-dateutil conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0 python_abi conda-forge/osx-arm64::python_abi-3.9-4_cp39 pytz conda-forge/noarch::pytz-2022.2.1-pyhd8ed1ab_0 six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source. Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_B added / updated specs: - python=3.9.12 The following NEW packages will be INSTALLED: bzip2 conda-forge/osx-arm64::bzip2-1.0.8-h93a5062_5 ca-certificates conda-forge/osx-arm64::ca-certificates-2024.6.2-hf0a4a13_0 libffi conda-forge/osx-arm64::libffi-3.4.2-h3422bc3_5 libsqlite conda-forge/osx-arm64::libsqlite-3.45.3-h091b4b1_0 libzlib conda-forge/osx-arm64::libzlib-1.3.1-hfb2fe0b_1 ncurses conda-forge/osx-arm64::ncurses-6.5-hb89a1cb_0 openssl conda-forge/osx-arm64::openssl-3.3.1-hfb2fe0b_0 pip conda-forge/noarch::pip-24.0-pyhd8ed1ab_0 python conda-forge/osx-arm64::python-3.9.12-h14b404e_1_cpython readline conda-forge/osx-arm64::readline-8.2-h92ec313_1 setuptools conda-forge/noarch::setuptools-70.0.0-pyhd8ed1ab_0 sqlite conda-forge/osx-arm64::sqlite-3.45.3-hf2abe2d_0 tk conda-forge/osx-arm64::tk-8.6.13-h5083fa2_1 tzdata conda-forge/noarch::tzdata-2024a-h0c530f3_0 wheel conda-forge/noarch::wheel-0.43.0-pyhd8ed1ab_1 xz conda-forge/osx-arm64::xz-5.2.6-h57fd34a_0 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 4.12.0 latest version: 24.5.0 Please update conda by running $ conda update -n base -c defaults conda # All requested packages already installed. Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve. Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 4.12.0 latest version: 24.5.0 Please update conda by running $ conda update -n base -c defaults conda ## Package Plan ## environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_B added / updated specs: - pandas=1.4.2 - python-dateutil=2.8.1 - python=3.9.12 - pytz=2022.1 The following NEW packages will be INSTALLED: libblas conda-forge/osx-arm64::libblas-3.9.0-22_osxarm64_openblas libcblas conda-forge/osx-arm64::libcblas-3.9.0-22_osxarm64_openblas libcxx conda-forge/osx-arm64::libcxx-17.0.6-h5f092b4_0 libgfortran conda-forge/osx-arm64::libgfortran-5.0.0-13_2_0_hd922786_3 libgfortran5 conda-forge/osx-arm64::libgfortran5-13.2.0-hf226fd6_3 liblapack conda-forge/osx-arm64::liblapack-3.9.0-22_osxarm64_openblas libopenblas conda-forge/osx-arm64::libopenblas-0.3.27-openmp_h6c19121_0 llvm-openmp conda-forge/osx-arm64::llvm-openmp-18.1.7-hde57baf_0 numpy conda-forge/osx-arm64::numpy-1.26.4-py39h7aa2656_0 pandas conda-forge/osx-arm64::pandas-1.4.2-py39hd2dba81_2 python-dateutil conda-forge/noarch::python-dateutil-2.8.1-py_0 python_abi conda-forge/osx-arm64::python_abi-3.9-4_cp39 pytz conda-forge/noarch::pytz-2022.1-pyhd8ed1ab_0 six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done [ FAIL 0 | WARN 0 | SKIP 1 | PASS 61 ] ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ • On Mac aarch64 (1): 'test-install.R:35:5' [ FAIL 0 | WARN 0 | SKIP 1 | PASS 61 ] > > proc.time() user system elapsed 772.353 232.723 1175.096
basilisk.Rcheck/basilisk-Ex.timings
name | user | system | elapsed | |
BasiliskEnvironment-class | 0.004 | 0.000 | 0.004 | |
PyPiLink | 0 | 0 | 0 | |
basiliskOptions | 0 | 0 | 0 | |
basiliskStart | 195.468 | 47.982 | 274.045 | |
configureBasiliskEnv | 0 | 0 | 0 | |
createLocalBasiliskEnv | 68.327 | 21.879 | 99.432 | |
listPackages | 0.541 | 0.226 | 1.026 | |
obtainEnvironmentPath | 0.003 | 0.002 | 0.005 | |
setupBasiliskEnv | 0.002 | 0.001 | 0.004 | |
useBasiliskEnv | 0.872 | 0.317 | 1.218 | |