Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-08-21 11:40 -0400 (Wed, 21 Aug 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4703 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4440 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4472 |
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4421 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4414 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 2/2255 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
a4Base 1.53.0 (landing page) Laure Cougnaud
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ![]() | ||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK | ![]() | ||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the a4Base package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/a4Base.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: a4Base |
Version: 1.53.0 |
Command: F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:a4Base.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings a4Base_1.53.0.tar.gz |
StartedAt: 2024-08-20 22:10:30 -0400 (Tue, 20 Aug 2024) |
EndedAt: 2024-08-20 22:14:21 -0400 (Tue, 20 Aug 2024) |
EllapsedTime: 230.5 seconds |
RetCode: 0 |
Status: OK |
CheckDir: a4Base.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:a4Base.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings a4Base_1.53.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'F:/biocbuild/bbs-3.20-bioc/meat/a4Base.Rcheck' * using R version 4.4.1 (2024-06-14 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * using option '--no-vignettes' * checking for file 'a4Base/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'a4Base' version '1.53.0' * checking package namespace information ... OK * checking package dependencies ... NOTE Package which this enhances but not available for checking: 'JavaGD' * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'a4Base' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking whether startup messages can be suppressed ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE checkRd: (-1) computeLogRatio.Rd:49-51: Lost braces in \itemize; meant \describe ? checkRd: (-1) computeLogRatio.Rd:52-55: Lost braces in \itemize; meant \describe ? checkRd: (-1) filterVarInt.Rd:52: Escaped LaTeX specials: \& checkRd: (-1) histPvalue.Rd:50: Escaped LaTeX specials: \& checkRd: (-1) lassoReg.Rd:38: Escaped LaTeX specials: \& checkRd: (-1) plotLogRatio.Rd:166: Lost braces in \itemize; meant \describe ? checkRd: (-1) plotLogRatio.Rd:167: Lost braces in \itemize; meant \describe ? checkRd: (-1) plotLogRatio.Rd:168: Lost braces in \itemize; meant \describe ? checkRd: (-1) plotLogRatio.Rd:169: Lost braces in \itemize; meant \describe ? checkRd: (-1) plotLogRatio.Rd:170: Lost braces in \itemize; meant \describe ? checkRd: (-1) plotLogRatio.Rd:183-185: Lost braces in \itemize; meant \describe ? checkRd: (-1) plotLogRatio.Rd:186-191: Lost braces in \itemize; meant \describe ? checkRd: (-1) plotLogRatio.Rd:192-200: Lost braces in \itemize; meant \describe ? checkRd: (-1) plotLogRatio.Rd:201-203: Lost braces in \itemize; meant \describe ? checkRd: (-1) spectralMap.Rd:49: Escaped LaTeX specials: \& checkRd: (-1) topTable-methods.Rd:112: Lost braces in \itemize; meant \describe ? checkRd: (-1) volcanoPlot.Rd:45: Escaped LaTeX specials: \& * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed spectralMap 12.00 1.14 13.14 computeLogRatio 5.19 0.30 5.48 plotLogRatio 5.21 0.26 5.48 * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See 'F:/biocbuild/bbs-3.20-bioc/meat/a4Base.Rcheck/00check.log' for details.
a4Base.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL a4Base ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.20-bioc/R/library' * installing *source* package 'a4Base' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (a4Base)
a4Base.Rcheck/a4Base-Ex.timings
name | user | system | elapsed | |
a4palette | 0.05 | 0.00 | 0.04 | |
addQuantilesColors | 2.08 | 0.18 | 2.28 | |
boxPlot | 2.72 | 0.22 | 2.96 | |
combineTwoExpressionSet | 0 | 0 | 0 | |
computeLogRatio | 5.19 | 0.30 | 5.48 | |
createExpressionSet | 0.05 | 0.00 | 0.04 | |
filterVarInt | 1.92 | 0.16 | 2.08 | |
heatmap.expressionSet | 0 | 0 | 0 | |
histPvalue | 1.88 | 0.12 | 2.00 | |
histpvalueplotter | 2.25 | 0.14 | 2.41 | |
lassoReg | 2.03 | 0.10 | 2.16 | |
logReg | 0 | 0 | 0 | |
nlcvTT | 0 | 0 | 0 | |
plot1gene | 1.93 | 0.14 | 2.07 | |
plotComb2Samples | 2.17 | 0.13 | 2.31 | |
plotCombMultSamples | 2.93 | 0.14 | 3.08 | |
plotCombination2genes | 2.75 | 0.14 | 2.89 | |
plotLogRatio | 5.21 | 0.26 | 5.48 | |
probabilitiesPlot | 0 | 0 | 0 | |
probe2gene | 1.52 | 0.11 | 1.63 | |
profilesPlot | 1.64 | 0.21 | 1.85 | |
propdegenescalculation | 1.62 | 0.12 | 1.76 | |
replicates | 0 | 0 | 0 | |
spectralMap | 12.00 | 1.14 | 13.14 | |
tTest | 2.15 | 0.13 | 2.31 | |
volcanoPlot | 2.25 | 0.11 | 2.36 | |