Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-08-21 11:42 -0400 (Wed, 21 Aug 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4703 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4440 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4472 |
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4421 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4414 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 2211/2255 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
VegaMC 3.43.0 (landing page) Sandro Morganella
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | WARNINGS | ![]() | ||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | ![]() | ||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | ![]() | ||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | WARNINGS | OK | ![]() | ||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | WARNINGS | ||||||||||
To the developers/maintainers of the VegaMC package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/VegaMC.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: VegaMC |
Version: 3.43.0 |
Command: rm -rf VegaMC.buildbin-libdir && mkdir VegaMC.buildbin-libdir && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL --build --library=VegaMC.buildbin-libdir VegaMC_3.43.0.tar.gz |
StartedAt: 2024-08-21 08:22:45 -0400 (Wed, 21 Aug 2024) |
EndedAt: 2024-08-21 08:23:10 -0400 (Wed, 21 Aug 2024) |
EllapsedTime: 24.8 seconds |
RetCode: 0 |
Status: OK |
PackageFile: VegaMC_3.43.0.zip |
PackageFileSize: 1.708 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf VegaMC.buildbin-libdir && mkdir VegaMC.buildbin-libdir && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL --build --library=VegaMC.buildbin-libdir VegaMC_3.43.0.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'VegaMC' ... ** using staged installation ** libs using C compiler: 'gcc.exe (GCC) 13.2.0' gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c run_vegaMC.c -o run_vegaMC.o run_vegaMC.c: In function 'run_vegaMC': run_vegaMC.c:144:13: warning: too many arguments for format [-Wformat-extra-args] 144 | Rprintf("\tAberration Matrices Successfully Computed\n", num_seg_regions); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ run_vegaMC.c:149:13: warning: too many arguments for format [-Wformat-extra-args] 149 | Rprintf("\tStatistical Analysis Successfully Completed\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ run_vegaMC.c: In function 'read_params': run_vegaMC.c:618:18: warning: unused variable 'brkt' [-Wunused-variable] 618 | char *elem, *brkt; | ^~~~ run_vegaMC.c: In function 'load_data': run_vegaMC.c:564:14: warning: 'first_probe' may be used uninitialized [-Wmaybe-uninitialized] 564 | prev_chr = temp_probe->chromosome; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ run_vegaMC.c:481:12: note: 'first_probe' was declared here 481 | probe *first_probe, *prev_probe, *temp_probe; | ^~~~~~~~~~~ run_vegaMC.c:535:30: warning: 'position' may be used uninitialized [-Wmaybe-uninitialized] 535 | temp_probe->position = position; | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ run_vegaMC.c:498:20: note: 'position' was declared here 498 | int i = 0, position, chr; | ^~~~~~~~ run_vegaMC.c:534:32: warning: 'chr' may be used uninitialized [-Wmaybe-uninitialized] 534 | temp_probe->chromosome = chr; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~ run_vegaMC.c:498:30: note: 'chr' was declared here 498 | int i = 0, position, chr; | ^~~ run_vegaMC.c: In function 'call_VegaMC': run_vegaMC.c:435:32: warning: 'prev_seg' may be used uninitialized [-Wmaybe-uninitialized] 435 | prev_seg->next = tmp; | ~~~~~~~~~~~~~~~^~~~~ run_vegaMC.c:373:30: note: 'prev_seg' was declared here 373 | seg_element *first_seg, *prev_seg; | ^~~~~~~~ run_vegaMC.c:461:29: warning: 'first_seg' may be used uninitialized [-Wmaybe-uninitialized] 461 | for (i = 0; i < (tmp->num_regions); i++) { | ~~~~^~~~~~~~~~~~~~ run_vegaMC.c:373:18: note: 'first_seg' was declared here 373 | seg_element *first_seg, *prev_seg; | ^~~~~~~~~ gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c sort_data.c -o sort_data.o gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c vegaMC.c -o vegaMC.o vegaMC.c: In function 'heap_delete': vegaMC.c:235:10: warning: variable 'deleted' set but not used [-Wunused-but-set-variable] 235 | node deleted; | ^~~~~~~ vegaMC.c: In function 'init_trivial_segmentation': vegaMC.c:592:15: warning: variable 'index' set but not used [-Wunused-but-set-variable] 592 | int i, j, index; | ^~~~~ gcc -shared -s -static-libgcc -o VegaMC.dll tmp.def run_vegaMC.o sort_data.o vegaMC.o -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.20-bioc/R/bin/x64 -lR installing to F:/biocbuild/bbs-3.20-bioc/meat/VegaMC.buildbin-libdir/00LOCK-VegaMC/00new/VegaMC/libs/x64 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'VegaMC' as VegaMC_3.43.0.zip * DONE (VegaMC)