Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-08-21 11:42 -0400 (Wed, 21 Aug 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4703 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4440 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4472 |
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4421 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4414 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 2085/2255 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
TADCompare 1.15.0 (landing page) Mikhail Dozmorov
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ![]() | ||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK | ![]() | ||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the TADCompare package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/TADCompare.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: TADCompare |
Version: 1.15.0 |
Command: F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:TADCompare.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings TADCompare_1.15.0.tar.gz |
StartedAt: 2024-08-21 05:49:16 -0400 (Wed, 21 Aug 2024) |
EndedAt: 2024-08-21 05:52:49 -0400 (Wed, 21 Aug 2024) |
EllapsedTime: 213.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: TADCompare.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:TADCompare.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings TADCompare_1.15.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'F:/biocbuild/bbs-3.20-bioc/meat/TADCompare.Rcheck' * using R version 4.4.1 (2024-06-14 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * using option '--no-vignettes' * checking for file 'TADCompare/DESCRIPTION' ... OK * this is package 'TADCompare' version '1.15.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'TADCompare' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... NOTE License stub is invalid DCF. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE .Make_Triangles: no visible binding for global variable 'start' .Make_Triangles: no visible binding for global variable 'end' .Make_Triangles: no visible global function definition for 'na.omit' .Make_Triangles: no visible binding for global variable 'boundary_start' .Make_Triangles: no visible binding for global variable 'orig_regx' .Make_Triangles: no visible binding for global variable 'start1' .Make_Triangles: no visible binding for global variable 'boundary_end' ConsensusTADs : <anonymous>: no visible binding for global variable 'Coordinate' ConsensusTADs: no visible binding for global variable 'Sample' ConsensusTADs: no visible binding for global variable 'Boundary' ConsensusTADs: no visible binding for global variable 'Diff_Score' ConsensusTADs: no visible global function definition for 'sd' ConsensusTADs: no visible binding for global variable 'Differential' ConsensusTADs: no visible binding for global variable 'Coordinate' ConsensusTADs: no visible binding for global variable 'TAD_Score' ConsensusTADs: no visible binding for global variable '.' ConsensusTADs: no visible binding for global variable 'median' DiffPlot: no visible binding for global variable 'Type' DiffPlot: no visible binding for global variable 'Differential' DiffPlot: no visible binding for global variable 'Boundary' DiffPlot: no visible binding for global variable 'Enriched_In' DiffPlot: no visible global function definition for 'na.omit' DiffPlot: no visible binding for global variable 'boundary_start' DiffPlot: no visible binding for global variable 'orig_regx' DiffPlot: no visible binding for global variable 'start1' DiffPlot: no visible binding for global variable 'boundary_end' DiffPlot: no visible binding for global variable 'start2' DiffPlot: no visible binding for global variable 'TAD_Score1' DiffPlot: no visible binding for global variable 'TAD_Score2' DiffPlot: no visible binding for global variable 'Gap_Score' DiffPlot: no visible binding for global variable 'variable' DiffPlot: no visible binding for global variable 'value' DiffPlot: no visible binding for global variable 'line_spot' DiffPlot: no visible global function definition for 'complete.cases' DiffPlot: no visible binding for global variable '.' DiffPlot: no visible binding for global variable 'x' DiffPlot: no visible binding for global variable 'y' DiffPlot: no visible binding for global variable 'orig_regy' TADCompare: no visible global function definition for 'sd' TADCompare: no visible binding for global variable 'Boundary' TADCompare: no visible binding for global variable 'Gap_Score' TADCompare: no visible binding for global variable 'Differential' TADCompare: no visible binding for global variable 'Bound_Dist' TADCompare: no visible binding for global variable 'Enriched_In' TADCompare: no visible binding for global variable 'Type' TADCompare: no visible binding for global variable 'Count' TimeCompare : <anonymous>: no visible binding for global variable 'Coordinate' TimeCompare: no visible binding for global variable 'Sample' TimeCompare: no visible binding for global variable 'Groups' TimeCompare: no visible binding for global variable 'Coordinate' TimeCompare: no visible binding for global variable 'Boundary' TimeCompare: no visible global function definition for 'median' TimeCompare: no visible binding for global variable 'Diff_Score' TimeCompare: no visible global function definition for 'sd' TimeCompare: no visible binding for global variable 'Differential' TimeCompare: no visible binding for global variable 'TAD_Score' TimeCompare: no visible binding for global variable '.' TimeCompare: no visible binding for global variable 'median' TimeCompare: no visible binding for global variable 'Sample 1' TimeCompare: no visible binding for global variable 'Consensus_Score' TimeCompare: no visible binding for global variable 'Category' TimeCompare: no visible binding for global variable 'Count' Undefined global functions or variables: . Bound_Dist Boundary Category Consensus_Score Coordinate Count Diff_Score Differential Enriched_In Gap_Score Groups Sample Sample 1 TAD_Score TAD_Score1 TAD_Score2 Type boundary_end boundary_start complete.cases end line_spot median na.omit orig_regx orig_regy sd start start1 start2 value variable x y Consider adding importFrom("stats", "complete.cases", "end", "median", "na.omit", "sd", "start") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See 'F:/biocbuild/bbs-3.20-bioc/meat/TADCompare.Rcheck/00check.log' for details.
TADCompare.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL TADCompare ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.20-bioc/R/library' * installing *source* package 'TADCompare' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (TADCompare)
TADCompare.Rcheck/TADCompare-Ex.timings
name | user | system | elapsed | |
ConsensusTADs | 1.84 | 0.13 | 1.97 | |
DiffPlot | 1.83 | 0.09 | 1.92 | |
TADCompare | 0.15 | 0.03 | 0.19 | |
TimeCompare | 1.18 | 0.03 | 1.20 | |