Back to Multiple platform build/check report for BioC 3.20:   simplified   long
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This page was generated on 2024-10-09 11:45 -0400 (Wed, 09 Oct 2024).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.1 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4467
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4722
palomino8Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4472
lconwaymacOS 12.7.1 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4503
kjohnson3macOS 13.6.5 Venturaarm644.4.1 (2024-06-14) -- "Race for Your Life" 4451
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.4.1 (2024-06-14) -- "Race for Your Life" 4451
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2072/2270HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SurfR 1.1.0  (landing page)
Aurora Maurizio
Snapshot Date: 2024-10-08 13:40 -0400 (Tue, 08 Oct 2024)
git_url: https://git.bioconductor.org/packages/SurfR
git_branch: devel
git_last_commit: b43b6d4
git_last_commit_date: 2024-04-30 11:54:06 -0400 (Tue, 30 Apr 2024)
teran2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  skipped
palomino8Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.6.5 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    ERROR  

BUILD results for SurfR on palomino8

To the developers/maintainers of the SurfR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SurfR.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: SurfR
Version: 1.1.0
Command: chmod a+r SurfR -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data SurfR
StartedAt: 2024-10-08 21:44:05 -0400 (Tue, 08 Oct 2024)
EndedAt: 2024-10-08 21:46:15 -0400 (Tue, 08 Oct 2024)
EllapsedTime: 129.8 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r SurfR -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data SurfR
###
##############################################################################
##############################################################################


* checking for file 'SurfR/DESCRIPTION' ... OK
* preparing 'SurfR':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'Intro_to_SurfR.Rmd' using rmarkdown
trying URL 'https://gdc.cancer.gov/system/files/public/file/gdc-client_2.3_Windows_x64-py3.8-windows-2019.zip'
Content type 'application/zip' length 12060441 bytes (11.5 MB)
==================================================
downloaded 11.5 MB


Quitting from lines 382-393 [unnamed-chunk-3] (Intro_to_SurfR.Rmd)
Error: processing vignette 'Intro_to_SurfR.Rmd' failed with diagnostics:
I couldn't find all the files from the query. Please check if the directory parameter is right or `GDCdownload` downloaded the samples.
--- failed re-building 'Intro_to_SurfR.Rmd'

SUMMARY: processing the following file failed:
  'Intro_to_SurfR.Rmd'

Error: Vignette re-building failed.
Execution halted