Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-10-05 11:44 -0400 (Sat, 05 Oct 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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teran2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4461 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4466 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4498 |
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4446 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4445 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 2062/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Patrick Kimes
| teran2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | ERROR | skipped | ||||||||||
To the developers/maintainers of the SummarizedBenchmark package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SummarizedBenchmark.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: SummarizedBenchmark |
Version: 2.23.1 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data SummarizedBenchmark |
StartedAt: 2024-10-04 18:57:21 -0400 (Fri, 04 Oct 2024) |
EndedAt: 2024-10-04 18:58:48 -0400 (Fri, 04 Oct 2024) |
EllapsedTime: 86.9 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data SummarizedBenchmark ### ############################################################################## ############################################################################## * checking for file ‘SummarizedBenchmark/DESCRIPTION’ ... OK * preparing ‘SummarizedBenchmark’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘CaseStudy-RNAseqQuantification.Rmd’ using rmarkdown 2024-10-04 18:57:37.279 R[30168:27392023] XType: Using static font registry. --- finished re-building ‘CaseStudy-RNAseqQuantification.Rmd’ --- re-building ‘CaseStudy-SingleCellSimulation.Rmd’ using rmarkdown Quitting from lines 97-102 [run-sim-buildbench] (CaseStudy-SingleCellSimulation.Rmd) Error: processing vignette 'CaseStudy-SingleCellSimulation.Rmd' failed with diagnostics: No method returned valid values for any assays! --- failed re-building ‘CaseStudy-SingleCellSimulation.Rmd’ --- re-building ‘Feature-ErrorHandling.Rmd’ using rmarkdown --- finished re-building ‘Feature-ErrorHandling.Rmd’ --- re-building ‘Feature-Iterative.Rmd’ using rmarkdown --- finished re-building ‘Feature-Iterative.Rmd’ --- re-building ‘Feature-Parallel.Rmd’ using rmarkdown --- finished re-building ‘Feature-Parallel.Rmd’ --- re-building ‘SummarizedBenchmark-ClassDetails.Rmd’ using rmarkdown --- finished re-building ‘SummarizedBenchmark-ClassDetails.Rmd’ --- re-building ‘SummarizedBenchmark-FullCaseStudy.Rmd’ using rmarkdown --- finished re-building ‘SummarizedBenchmark-FullCaseStudy.Rmd’ --- re-building ‘SummarizedBenchmark-Introduction.Rmd’ using rmarkdown --- finished re-building ‘SummarizedBenchmark-Introduction.Rmd’ SUMMARY: processing the following file failed: ‘CaseStudy-SingleCellSimulation.Rmd’ Error: Vignette re-building failed. Execution halted