Multiple platform build/check report for BioC 3.20 - BUILD results for SummarizedBenchmark on kjohnson1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 22.04.3 LTS)	x86_64	4.4.0 RC (2024-04-16 r86468) -- "Puppy Cup"	4679
palomino4	Windows Server 2022 Datacenter	x64	4.4.0 RC (2024-04-16 r86468 ucrt) -- "Puppy Cup"	4414
merida1	macOS 12.7.4 Monterey	x86_64	4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup"	4441
kjohnson1	macOS 13.6.6 Ventura	arm64	4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup"	4394
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for SummarizedBenchmark on kjohnson1

To the developers/maintainers of the SummarizedBenchmark package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SummarizedBenchmark.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: SummarizedBenchmark

Version: 2.23.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data SummarizedBenchmark

StartedAt: 2024-06-10 09:49:39 -0400 (Mon, 10 Jun 2024)

EndedAt: 2024-06-10 09:53:42 -0400 (Mon, 10 Jun 2024)

EllapsedTime: 243.2 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data SummarizedBenchmark
###
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* checking for file ‘SummarizedBenchmark/DESCRIPTION’ ... OK
* preparing ‘SummarizedBenchmark’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘CaseStudy-RNAseqQuantification.Rmd’ using rmarkdown
2024-06-10 09:50:28.686 R[30559:39619314] XType: Using static font registry.
--- finished re-building ‘CaseStudy-RNAseqQuantification.Rmd’

--- re-building ‘CaseStudy-SingleCellSimulation.Rmd’ using rmarkdown

Quitting from lines 47-54 [load-fluidigm-data] (CaseStudy-SingleCellSimulation.Rmd)
Error: processing vignette 'CaseStudy-SingleCellSimulation.Rmd' failed with diagnostics:
failed to open file at '~/Library/Caches/gypsum/bucket/scRNAseq/legacy/2023-12-18/fluidigm/other_data/list_contents.json.gz'
--- failed re-building ‘CaseStudy-SingleCellSimulation.Rmd’

--- re-building ‘Feature-ErrorHandling.Rmd’ using rmarkdown
--- finished re-building ‘Feature-ErrorHandling.Rmd’

--- re-building ‘Feature-Iterative.Rmd’ using rmarkdown
--- finished re-building ‘Feature-Iterative.Rmd’

--- re-building ‘Feature-Parallel.Rmd’ using rmarkdown
--- finished re-building ‘Feature-Parallel.Rmd’

--- re-building ‘SummarizedBenchmark-ClassDetails.Rmd’ using rmarkdown
--- finished re-building ‘SummarizedBenchmark-ClassDetails.Rmd’

--- re-building ‘SummarizedBenchmark-FullCaseStudy.Rmd’ using rmarkdown
--- finished re-building ‘SummarizedBenchmark-FullCaseStudy.Rmd’

--- re-building ‘SummarizedBenchmark-Introduction.Rmd’ using rmarkdown
--- finished re-building ‘SummarizedBenchmark-Introduction.Rmd’

SUMMARY: processing the following file failed:
  ‘CaseStudy-SingleCellSimulation.Rmd’

Error: Vignette re-building failed.
Execution halted