Mustafa Erhan Ozer
| Snapshot Date: 2024-07-05 14:00 -0400 (Fri, 05 Jul 2024) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: devel |
| git_last_commit: b5eba63 |
| git_last_commit_date: 2024-04-30 11:49:19 -0400 (Tue, 30 Apr 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-07-06 11:41 -0400 (Sat, 06 Jul 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4643 |
| palomino6 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4414 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4442 |
| kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4391 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 3833 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2056/2243 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.5.0 (landing page) Mustafa Erhan Ozer
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino6 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | NA | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.5.0 |
| Command: C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SVMDO.install-out.txt --library=C:\Users\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings SVMDO_1.5.0.tar.gz |
| StartedAt: 2024-07-06 04:40:22 -0400 (Sat, 06 Jul 2024) |
| EndedAt: 2024-07-06 04:45:50 -0400 (Sat, 06 Jul 2024) |
| EllapsedTime: 327.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SVMDO.install-out.txt --library=C:\Users\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings SVMDO_1.5.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'C:/Users/biocbuild/bbs-3.20-bioc/meat/SVMDO.Rcheck'
* using R version 4.4.1 (2024-06-14 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
gcc.exe (GCC) 13.2.0
GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'SVMDO/DESCRIPTION' ... OK
* this is package 'SVMDO' version '1.5.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'SVMDO' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library 'C:/Users/biocbuild/bbs-3.20-bioc/R/library' * installing *source* package 'SVMDO' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading `shiny::dataTableOutput()` is deprecated as of shiny 1.8.1. Please use `DT::DTOutput()` instead. Since you have a suitable version of DT (>= v0.32.1), shiny::dataTableOutput() will automatically use DT::DTOutput() under-the-hood. If this happens to break your app, set `options(shiny.legacy.datatable = TRUE)` to get the legacy datatable implementation (or `FALSE` to squelch this message). See <https://rstudio.github.io/DT/shiny.html> for more information. ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R version 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 2314,112609,80331,2159,5723,5023
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57192,55858,3700,5473,56848,132
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 142,3105,219,3920,940,3316
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 570,23586,909,5476,1909,6301
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10,4522,130589,5743,2271,2694
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 32,3401,9409,2660,50674,54796
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7421,2949,5320,5092,5230,1571
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6376,1499,26227,6356,1347,6391
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5467,55902,183,940,10320,1806
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 347,2739,1113,60386,27035,10008
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 27010,686,7372,2678,80224,79661
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6716,7018,929,5276,4915,54809
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 216,3034,9945,178,22852,5291
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3551,59067,3406,3315,265,166785
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1075,2109,6941,6339,4162,4654
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3087,2806,196743,4540,594,55572
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 467,5313,1028,57215,133396,6301
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4153,1337,137682,10991,55788,6555
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54575,2786,4276,3033,7078,56259
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3760,4891,5409,4889,8813,2712
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3479,6403,8659,5920,572,2260
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2660,83854,4508,145264,100506742,2760
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2026,5175,175,4925,664,3708
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 63899,407024,212,2597,2309,51021
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2647,10642,3685,23163,10128,6339
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2488,1208,1401,836,166785,1548
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3700,353500,6647,1363,406906,28958
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84701,84447,5116,29851,9409,23118
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64919,3157,776,5825,407024,6376
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 107075310,3373,29843,1909,4826,191
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23236,6339,3423,2694,9437,64801
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79087,94235,6280,2137,875,79731
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 124976,7031,8714,91452,4162,3768
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5476,3251,4351,6462,2646,79934
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1208,5286,125988,7431,203,999
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9370,595,4705,3625,5697,53345
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4709,6770,6347,152078,239,6690
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 131118,841,10857,118,2835,56923
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56623,3654,5078,8856,1544,7275
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55024,644974,153642,4729,2548,9056
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55748,4091,643387,84277,4843,124454
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5467,9607,10116,1584,6657,5687
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4055,37,91942,80224,842,57554
--> return NULL...
No gene sets have size between 10 and 500 ...
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56938,142,4049,116519,25813,3784
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23062,11213,63899,80267,84705,9317
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4255,130589,6502,4591,388962,84342
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8398,3605,2524,130120,7351,221895
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3932,5662,54796,23178,9180,7200
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2559,7915,249,81034,3577,2785
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 183,6392,2495,644974,1965,4017
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2793,59340,7916,6583,2984,23600
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6510,11213,3875,84342,57818,6690
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4017,8660,1232,91942,7249,5601
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6232,3978,4656,347,3062,9317
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3242,158,55037,3309,407009,5020
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5261,1641,22877,4705,3425,8854
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7391,407024,821,91647,56729,112817
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9619,81034,3600,1116,84684,7032
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2517,2056,7325,599,2919,4502
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8431,844,4537,23178,60386,1508
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55970,11136,654,5250,1409,55829
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 22868,1641,5054,2581,6403,23411
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3938,5328,493927,64801,100506742,624
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3101,116985,5243,10644,3565,43
--> return NULL...
No gene sets have size between 10 and 500 ...
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 175,56052,54982,53335,7422,166785
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 488,5465,8942,793,150379,2696
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 344905,6414,29126,407024,8862,3592
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10221,197322,5586,1268,185,2155
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5080,5443,3284,4502,79071,6696
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55829,2587,7289,7525,65080,8813
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3725,406922,4088,518,23753,1582
--> return NULL...
No gene sets have size between 10 and 500 ...
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9997,53632,1524,55600,55863,1636
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79068,6616,3554,3291,54539,10628
--> return NULL...
No gene sets have size between 10 and 500 ...
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 53947,1607,2559,1629,8691,6814
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6382,59272,4598,7525,4536,5625
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2157,8639,2100,23118,8879,1906
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7422,54658,7137,270,353500,7919
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5967,56938,2695,10166,54600,6351
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10000,2852,2161,3558,54210,27429
--> return NULL...
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
82.50 3.14 87.00
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.50 | 0.01 | 0.52 | |