Xiuwen Zheng
| Snapshot Date: 2024-07-05 14:00 -0400 (Fri, 05 Jul 2024) |
| git_url: https://git.bioconductor.org/packages/SNPRelate |
| git_branch: devel |
| git_last_commit: 9da19ab |
| git_last_commit_date: 2024-04-30 10:38:38 -0400 (Tue, 30 Apr 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-07-06 11:45 -0400 (Sat, 06 Jul 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4643 |
| palomino6 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4414 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4442 |
| kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4391 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 3833 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1963/2243 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SNPRelate 1.39.0 (landing page) Xiuwen Zheng
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino6 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the SNPRelate package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SNPRelate.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: SNPRelate |
| Version: 1.39.0 |
| Command: /home/biocbuild/R/R/bin/R CMD INSTALL SNPRelate |
| StartedAt: 2024-07-05 19:47:29 -0000 (Fri, 05 Jul 2024) |
| EndedAt: 2024-07-05 19:48:12 -0000 (Fri, 05 Jul 2024) |
| EllapsedTime: 42.6 seconds |
| RetCode: 0 |
| Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL SNPRelate ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.4.1/site-library’ * installing *source* package ‘SNPRelate’ ... ** using staged installation ** libs using C compiler: ‘gcc (GCC) 10.3.1’ using C++ compiler: ‘g++ (GCC) 10.3.1’ g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/home/biocbuild/R/R-4.4.1/site-library/gdsfmt/include' -I/usr/local/include -fPIC -g -O2 -Wall -c ConvToGDS.cpp -o ConvToGDS.o gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/home/biocbuild/R/R-4.4.1/site-library/gdsfmt/include' -I/usr/local/include -fPIC -g -O2 -Wall -c R_SNPRelate.c -o R_SNPRelate.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/home/biocbuild/R/R-4.4.1/site-library/gdsfmt/include' -I/usr/local/include -fPIC -g -O2 -Wall -c SNPRelate.cpp -o SNPRelate.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/home/biocbuild/R/R-4.4.1/site-library/gdsfmt/include' -I/usr/local/include -fPIC -g -O2 -Wall -c ThreadPool.cpp -o ThreadPool.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/home/biocbuild/R/R-4.4.1/site-library/gdsfmt/include' -I/usr/local/include -fPIC -g -O2 -Wall -c dGenGWAS.cpp -o dGenGWAS.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/home/biocbuild/R/R-4.4.1/site-library/gdsfmt/include' -I/usr/local/include -fPIC -g -O2 -Wall -c dVect.cpp -o dVect.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/home/biocbuild/R/R-4.4.1/site-library/gdsfmt/include' -I/usr/local/include -fPIC -g -O2 -Wall -c genBeta.cpp -o genBeta.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/home/biocbuild/R/R-4.4.1/site-library/gdsfmt/include' -I/usr/local/include -fPIC -g -O2 -Wall -c genEIGMIX.cpp -o genEIGMIX.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/home/biocbuild/R/R-4.4.1/site-library/gdsfmt/include' -I/usr/local/include -fPIC -g -O2 -Wall -c genFst.cpp -o genFst.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/home/biocbuild/R/R-4.4.1/site-library/gdsfmt/include' -I/usr/local/include -fPIC -g -O2 -Wall -c genHWE.cpp -o genHWE.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/home/biocbuild/R/R-4.4.1/site-library/gdsfmt/include' -I/usr/local/include -fPIC -g -O2 -Wall -c genIBD.cpp -o genIBD.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/home/biocbuild/R/R-4.4.1/site-library/gdsfmt/include' -I/usr/local/include -fPIC -g -O2 -Wall -c genIBS.cpp -o genIBS.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/home/biocbuild/R/R-4.4.1/site-library/gdsfmt/include' -I/usr/local/include -fPIC -g -O2 -Wall -c genKING.cpp -o genKING.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/home/biocbuild/R/R-4.4.1/site-library/gdsfmt/include' -I/usr/local/include -fPIC -g -O2 -Wall -c genLD.cpp -o genLD.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/home/biocbuild/R/R-4.4.1/site-library/gdsfmt/include' -I/usr/local/include -fPIC -g -O2 -Wall -c genPCA.cpp -o genPCA.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/home/biocbuild/R/R-4.4.1/site-library/gdsfmt/include' -I/usr/local/include -fPIC -g -O2 -Wall -c genSlideWin.cpp -o genSlideWin.o g++ -std=gnu++17 -shared -L/home/biocbuild/R/R-4.4.1/lib -L/usr/local/lib -o SNPRelate.so ConvToGDS.o R_SNPRelate.o SNPRelate.o ThreadPool.o dGenGWAS.o dVect.o genBeta.o genEIGMIX.o genFst.o genHWE.o genIBD.o genIBS.o genKING.o genLD.o genPCA.o genSlideWin.o -lpthread -lopenblas -L/usr/lib/gcc/aarch64-linux-gnu/10.3.1 -lgfortran -lm -L/home/biocbuild/R/R-4.4.1/lib -lR installing to /home/biocbuild/R/R-4.4.1/site-library/00LOCK-SNPRelate/00new/SNPRelate/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SNPRelate)