Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-08-21 11:45 -0400 (Wed, 21 Aug 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4703 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4440 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4472 |
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4421 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4414 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1687/2255 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
RedeR 3.1.0 (landing page) Mauro Castro
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ![]() | ||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK | ![]() | ||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the RedeR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RedeR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: RedeR |
Version: 3.1.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:RedeR.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings RedeR_3.1.0.tar.gz |
StartedAt: 2024-08-20 23:36:45 -0400 (Tue, 20 Aug 2024) |
EndedAt: 2024-08-20 23:37:02 -0400 (Tue, 20 Aug 2024) |
EllapsedTime: 17.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: RedeR.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:RedeR.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings RedeR_3.1.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/RedeR.Rcheck’ * using R version 4.4.1 (2024-06-14) * using platform: aarch64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.6.7 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘RedeR/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘RedeR’ version ‘3.1.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘RedeR’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking whether startup messages can be suppressed ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE checkRd: (-1) nestNodes-methods.Rd:47: Lost braces in \itemize; meant \describe ? checkRd: (-1) nestNodes-methods.Rd:48: Lost braces in \itemize; meant \describe ? checkRd: (-1) nestNodes-methods.Rd:49: Lost braces in \itemize; meant \describe ? checkRd: (-1) nestNodes-methods.Rd:50: Lost braces in \itemize; meant \describe ? checkRd: (-1) nestNodes-methods.Rd:51: Lost braces in \itemize; meant \describe ? checkRd: (-1) nestNodes-methods.Rd:52: Lost braces in \itemize; meant \describe ? checkRd: (-1) nestNodes-methods.Rd:53-54: Lost braces in \itemize; meant \describe ? checkRd: (-1) nestNodes-methods.Rd:55: Lost braces in \itemize; meant \describe ? checkRd: (-1) nestNodes-methods.Rd:56: Lost braces in \itemize; meant \describe ? checkRd: (-1) nestNodes-methods.Rd:57: Lost braces in \itemize; meant \describe ? checkRd: (-1) startRedeR.Rd:24: Lost braces in \itemize; meant \describe ? checkRd: (-1) startRedeR.Rd:25: Lost braces in \itemize; meant \describe ? checkRd: (-1) startRedeR.Rd:26: Lost braces in \itemize; meant \describe ? checkRd: (-1) startRedeR.Rd:27: Lost braces in \itemize; meant \describe ? checkRd: (-1) startRedeR.Rd:28: Lost braces in \itemize; meant \describe ? checkRd: (-1) startRedeR.Rd:29: Lost braces in \itemize; meant \describe ? checkRd: (-1) startRedeR.Rd:30: Lost braces in \itemize; meant \describe ? checkRd: (-1) startRedeR.Rd:31: Lost braces in \itemize; meant \describe ? checkRd: (-1) startRedeR.Rd:32: Lost braces in \itemize; meant \describe ? checkRd: (-1) startRedeR.Rd:33: Lost braces in \itemize; meant \describe ? checkRd: (-1) startRedeR.Rd:34: Lost braces in \itemize; meant \describe ? checkRd: (-1) startRedeR.Rd:35: Lost braces in \itemize; meant \describe ? checkRd: (-1) startRedeR.Rd:36: Lost braces in \itemize; meant \describe ? checkRd: (-1) startRedeR.Rd:37: Lost braces in \itemize; meant \describe ? checkRd: (-1) startRedeR.Rd:38: Lost braces in \itemize; meant \describe ? * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/biocbuild/bbs-3.20-bioc/meat/RedeR.Rcheck/00check.log’ for details.
RedeR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL RedeR ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘RedeR’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RedeR)
RedeR.Rcheck/RedeR-Ex.timings
name | user | system | elapsed | |
Deprecated | 0.000 | 0.001 | 0.000 | |
RedPort | 0.001 | 0.000 | 0.001 | |
RedeR-data1 | 0.022 | 0.001 | 0.024 | |
RedeR-data2 | 0.01 | 0.00 | 0.01 | |
addEdges-methods | 0.004 | 0.001 | 0.005 | |
addGraph-methods | 0.003 | 0.000 | 0.004 | |
addGraphToRedeR | 0.002 | 0.001 | 0.003 | |
addLegendToRedeR | 0 | 0 | 0 | |
addNodes-methods | 0.002 | 0.000 | 0.003 | |
calld-methods | 0 | 0 | 0 | |
deleteEdges-methods | 0.004 | 0.000 | 0.003 | |
deleteNodes-methods | 0.002 | 0.001 | 0.003 | |
exitRedeR | 0 | 0 | 0 | |
exitd-methods | 0.000 | 0.000 | 0.001 | |
getGraph-methods | 0.003 | 0.001 | 0.004 | |
getGraphFromRedeR | 0.002 | 0.000 | 0.003 | |
mergeOutEdges-methods | 0.003 | 0.001 | 0.004 | |
nestNodes-methods | 0.038 | 0.003 | 0.041 | |
ping-methods | 0 | 0 | 0 | |
pingRedeR | 0 | 0 | 0 | |
relax-methods | 0.005 | 0.001 | 0.005 | |
relaxRedeR | 0.004 | 0.000 | 0.004 | |
resetRedeR | 0 | 0 | 0 | |
resetd-methods | 0.001 | 0.000 | 0.001 | |
selectEdges-methods | 0.002 | 0.000 | 0.003 | |
selectNodes-methods | 0.003 | 0.000 | 0.003 | |
startRedeR | 0 | 0 | 0 | |
subg | 0 | 0 | 0 | |
transform.attributes | 0.007 | 0.000 | 0.007 | |
updateLayoutFromRedeR | 0.002 | 0.001 | 0.002 | |
version-methods | 0.001 | 0.000 | 0.000 | |