Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-08-21 11:40 -0400 (Wed, 21 Aug 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4703 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4440 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4472 |
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4421 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4414 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1658/2255 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
RCASPAR 1.51.0 (landing page) Douaa Mugahid
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ![]() | ||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK | ![]() | ||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the RCASPAR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RCASPAR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: RCASPAR |
Version: 1.51.0 |
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:RCASPAR.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings RCASPAR_1.51.0.tar.gz |
StartedAt: 2024-08-21 02:37:09 -0400 (Wed, 21 Aug 2024) |
EndedAt: 2024-08-21 02:37:29 -0400 (Wed, 21 Aug 2024) |
EllapsedTime: 20.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: RCASPAR.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:RCASPAR.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings RCASPAR_1.51.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/RCASPAR.Rcheck’ * using R version 4.4.1 (2024-06-14) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 * running under: Ubuntu 22.04.4 LTS * using session charset: UTF-8 * checking for file ‘RCASPAR/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘RCASPAR’ version ‘1.51.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘RCASPAR’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Title field: should not end in a period. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE kmplt_svrl: no visible global function definition for ‘lines’ kmplt_svrl: no visible global function definition for ‘legend’ logrnk: no visible global function definition for ‘pchisq’ pltprior: no visible global function definition for ‘persp’ weights_BLH: no visible global function definition for ‘optim’ Undefined global functions or variables: legend lines optim pchisq persp Consider adding importFrom("graphics", "legend", "lines", "persp") importFrom("stats", "optim", "pchisq") to your NAMESPACE file. * checking Rd files ... NOTE checkRd: (-1) STpredictor_BLH.Rd:21: Escaped LaTeX specials: \_ checkRd: (-1) STpredictor_BLH.Rd:39: Escaped LaTeX specials: \_ checkRd: (-1) STpredictor_BLH.Rd:78: Escaped LaTeX specials: \_ checkRd: (-1) STpredictor_BLH.Rd:79: Escaped LaTeX specials: \_ \_ checkRd: (-1) STpredictor_BLH.Rd:81: Escaped LaTeX specials: \_ \_ checkRd: (-1) STpredictor_BLH.Rd:82: Escaped LaTeX specials: \_ checkRd: (-1) deriv_weight_estimator_BLH.rd:41: Escaped LaTeX specials: \_ checkRd: (-1) deriv_weight_estimator_BLH.rd:45: Escaped LaTeX specials: \_ checkRd: (-1) deriv_weight_estimator_BLH.rd:46: Escaped LaTeX specials: \_ checkRd: (-1) deriv_weight_estimator_BLH.rd:64: Lost braces 64 | \code{\link{weight_estimator_BLH}}, code{\link{deriv_weight_estimator_BLH_noprior}} | ^ checkRd: (-1) deriv_weight_estimator_BLH_noprior.rd:17: Escaped LaTeX specials: \_ checkRd: (-1) deriv_weight_estimator_BLH_noprior.rd:36: Escaped LaTeX specials: \_ checkRd: (-1) deriv_weight_estimator_BLH_noprior.rd:40: Escaped LaTeX specials: \_ checkRd: (-1) deriv_weight_estimator_BLH_noprior.rd:41: Escaped LaTeX specials: \_ checkRd: (-1) logrnk.Rd:23: Escaped LaTeX specials: \_ \_ * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See ‘/home/biocbuild/bbs-3.20-bioc/meat/RCASPAR.Rcheck/00check.log’ for details.
RCASPAR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL RCASPAR ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.20-bioc/R/site-library’ * installing *source* package ‘RCASPAR’ ... ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RCASPAR)
RCASPAR.Rcheck/RCASPAR-Ex.timings
name | user | system | elapsed | |
Bergamaschi | 0.014 | 0.000 | 0.015 | |
RCASPAR-package | 0.230 | 0.008 | 0.238 | |
STpredictor_BLH | 0.022 | 0.004 | 0.026 | |
STpredictor_xvBLH | 0.244 | 0.003 | 0.249 | |
deriv_weight_estimator_BLH | 0.002 | 0.001 | 0.002 | |
deriv_weight_estimator_BLH_noprior | 0.002 | 0.000 | 0.001 | |
kmplt | 0.002 | 0.000 | 0.002 | |
kmplt_svrl | 0.005 | 0.000 | 0.005 | |
logrnk | 0.001 | 0.000 | 0.001 | |
pltgamma | 0.001 | 0.000 | 0.002 | |
pltprior | 0.002 | 0.000 | 0.002 | |
simpson | 0.000 | 0.000 | 0.001 | |
survData | 0.001 | 0.000 | 0.001 | |
survivAURC | 0.078 | 0.000 | 0.079 | |
survivROC | 0.019 | 0.000 | 0.020 | |
trapezoid | 0 | 0 | 0 | |
weight_estimator_BLH | 0.001 | 0.000 | 0.000 | |
weight_estimator_BLH_noprior | 0.002 | 0.000 | 0.002 | |
weights_BLH | 0.000 | 0.003 | 0.003 | |
weights_xvBLH | 0.023 | 0.001 | 0.023 | |