Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-06-11 15:42 -0400 (Tue, 11 Jun 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" | 4679 |
palomino4 | Windows Server 2022 Datacenter | x64 | 4.4.0 RC (2024-04-16 r86468 ucrt) -- "Puppy Cup" | 4414 |
merida1 | macOS 12.7.4 Monterey | x86_64 | 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" | 4441 |
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" | 4394 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1437/2239 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
OpenStats 1.17.0 (landing page) Marina Kan
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ![]() | ||||||||
merida1 | macOS 12.7.4 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | ![]() | ||||||||
To the developers/maintainers of the OpenStats package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/OpenStats.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: OpenStats |
Version: 1.17.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:OpenStats.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings OpenStats_1.17.0.tar.gz |
StartedAt: 2024-06-10 07:28:32 -0400 (Mon, 10 Jun 2024) |
EndedAt: 2024-06-10 07:32:51 -0400 (Mon, 10 Jun 2024) |
EllapsedTime: 259.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: OpenStats.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:OpenStats.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings OpenStats_1.17.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/OpenStats.Rcheck’ * using R version 4.4.0 Patched (2024-04-24 r86482) * using platform: x86_64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Monterey 12.7.4 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘OpenStats/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘OpenStats’ version ‘1.17.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘OpenStats’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking whether startup messages can be suppressed ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE checkRd: (-1) OpenStatsAnalysis.Rd:108: Escaped LaTeX specials: \& \& \& \& \& * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed OpenStatsReport 4.525 0.531 6.452 OpenStatsAnalysis 3.966 0.181 9.245 * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/biocbuild/bbs-3.20-bioc/meat/OpenStats.Rcheck/00check.log’ for details.
OpenStats.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL OpenStats ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’ * installing *source* package ‘OpenStats’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (OpenStats)
OpenStats.Rcheck/OpenStats-Ex.timings
name | user | system | elapsed | |
OpenStatsAnalysis | 3.966 | 0.181 | 9.245 | |
OpenStatsBuilder | 0.001 | 0.002 | 0.002 | |
OpenStatsComplementarySplit | 2.960 | 0.057 | 3.749 | |
OpenStatsList | 2.326 | 0.175 | 3.098 | |
OpenStatsReport | 4.525 | 0.531 | 6.452 | |
plot.OpenStats | 1.181 | 0.148 | 1.703 | |
plot.OpenStatsComplementarySplit | 3.417 | 0.424 | 4.672 | |
plot.OpenStatsFE | 0.175 | 0.018 | 0.237 | |
plot.OpenStatsMM | 1.487 | 0.145 | 2.037 | |
plot.OpenStatsRR | 0.618 | 0.072 | 0.880 | |
print.OpenStats | 1.058 | 0.117 | 1.490 | |
print.OpenStatsComplementarySplit | 3.276 | 0.407 | 4.605 | |
print.OpenStatsFE | 0.156 | 0.018 | 0.251 | |
print.OpenStatsMM | 1.139 | 0.147 | 1.506 | |
print.OpenStatsRR | 0.603 | 0.068 | 0.817 | |
summary.OpenStats | 1.105 | 0.120 | 1.569 | |
summary.OpenStatsComplementarySplit | 3.251 | 0.405 | 4.599 | |
summary.OpenStatsFE | 0.150 | 0.017 | 0.182 | |
summary.OpenStatsMM | 1.145 | 0.144 | 1.624 | |
summary.OpenStatsRR | 0.620 | 0.069 | 0.871 | |