| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-08-21 11:41 -0400 (Wed, 21 Aug 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4703 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4440 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4472 |
| kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4421 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4414 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1316/2255 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| MsBackendRawFileReader 1.11.3 (landing page) Christian Panse
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | ERROR | |||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | ERROR | OK | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | ERROR | ERROR | skipped | skipped | |||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | ERROR | ||||||||||
|
To the developers/maintainers of the MsBackendRawFileReader package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MsBackendRawFileReader.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: MsBackendRawFileReader |
| Version: 1.11.3 |
| Command: F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:MsBackendRawFileReader.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings MsBackendRawFileReader_1.11.3.tar.gz |
| StartedAt: 2024-08-21 02:58:31 -0400 (Wed, 21 Aug 2024) |
| EndedAt: 2024-08-21 03:04:45 -0400 (Wed, 21 Aug 2024) |
| EllapsedTime: 373.7 seconds |
| RetCode: 1 |
| Status: ERROR |
| CheckDir: MsBackendRawFileReader.Rcheck |
| Warnings: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:MsBackendRawFileReader.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings MsBackendRawFileReader_1.11.3.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'F:/biocbuild/bbs-3.20-bioc/meat/MsBackendRawFileReader.Rcheck'
* using R version 4.4.1 (2024-06-14 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
gcc.exe (GCC) 13.2.0
GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'MsBackendRawFileReader/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'MsBackendRawFileReader' version '1.11.3'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MsBackendRawFileReader' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
ioBenchmark 9.08 2.76 58.10
MsBackendRawFileReader 1.17 0.08 42.54
MsBackendRawFileReader-class 0.90 0.03 13.77
hidden_aliases 0.33 0.00 12.96
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'testthat.R'
ERROR
Running the tests in 'tests/testthat.R' failed.
Last 13 lines of output:
── Skipped tests (1) ───────────────────────────────────────────────────────────
• empty test (1): 'test_spectra_variables.R:262:1'
── Failed tests ────────────────────────────────────────────────────────────────
Failure ('test_peaks_variables.R:16:5'): peaksData columns and peaksVariables match
colnames(res[[1L]]) not equal to peaksVariables(be).
Lengths differ: 5 is not 2
Failure ('test_spectra_variables.R:205:5'): peaksData
colnames(m) not equal to c("mz", "intensity").
Lengths differ: 5 is not 2
[ FAIL 2 | WARN 0 | SKIP 1 | PASS 2381 ]
Error: Test failures
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 ERROR
See
'F:/biocbuild/bbs-3.20-bioc/meat/MsBackendRawFileReader.Rcheck/00check.log'
for details.
MsBackendRawFileReader.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL MsBackendRawFileReader ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.20-bioc/R/library' * installing *source* package 'MsBackendRawFileReader' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MsBackendRawFileReader)
MsBackendRawFileReader.Rcheck/tests/testthat.Rout.fail
R version 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library("testthat")
> library("MsBackendRawFileReader")
Loading required package: Spectra
Loading required package: S4Vectors
Loading required package: stats4
Loading required package: BiocGenerics
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, table, tapply,
union, unique, unsplit, which.max, which.min
Attaching package: 'S4Vectors'
The following object is masked from 'package:utils':
findMatches
The following objects are masked from 'package:base':
I, expand.grid, unname
Loading required package: BiocParallel
Loading required package: ProtGenerics
Attaching package: 'ProtGenerics'
The following object is masked from 'package:stats':
smooth
> library("Spectra")
>
>
> sample_raw_file <- file.path(system.file(package = "rawrr"),
+ 'extdata', 'sample.raw')
>
> sample_mzXML_file <- file.path(path.package(package = 'MsBackendRawFileReader'),
+ 'extdata', 'sample.mzXML')
>
>
> sample_raw <- backendInitialize(MsBackendRawFileReader::MsBackendRawFileReader(), files = sample_raw_file)
>
>
> #sample_mzr <- backendInitialize(MsBackendMzR(), files = sample_mzXML_file)
>
>
> mgf_file <- file.path(system.file(package = "MsBackendRawFileReader"),
+ 'extdata', '3159619b11ed_4590_9594.mgf')
>
>
> rv <- lapply(1:2, function(x){
+ file.copy(from = sample_raw_file, to = tempfile(fileext='.raw'))})
>
>
> register(SnowParam(workers = 1, type = "SOCK") , default = TRUE);
> sample_raw_2 <- backendInitialize(MsBackendRawFileReader(),
+ files = file.path(tempdir(),
+ list.files(path = tempdir(), pattern = 'raw$')))
>
>
> test_check("MsBackendRawFileReader")
[ FAIL 0 | WARN 1 | SKIP 2 | PASS 21 ]
══ Skipped tests (2) ═══════════════════════════════════════════════════════════
• isFALSE(file.exists(sample_mzXML_file)) is TRUE (1):
'test_MsBackendMzR_MsBackendRawFileReader.R:1:1'
• isFALSE(require(MsBackendRawMgf)) is TRUE (1): 'test_top_n_mgf.R:1:1'
[ FAIL 0 | WARN 1 | SKIP 2 | PASS 21 ]
>
>
> be <- Spectra::backendInitialize(MsBackendRawFileReader::MsBackendRawFileReader(),
+ files = c(sample_raw_file))
>
> ## Run the MsBackend spectra variable test suite
> test_suite <- system.file("test_backends", "test_MsBackend",
+ package = "Spectra")
>
> #res <- test_file(paste0(test_suite, "/test_spectra_variables.R"),
> # reporter = check_reporter(), stop_on_failure = TRUE)
>
>
> ## Run the whole suite.
> res <- test_dir(test_suite, stop_on_failure = TRUE)
✔ | F W S OK | Context
⠏ | 0 | peaks_variables
⠙ | 2 | peaks_variables
⠸ | 1 3 | peaks_variables
✖ | 1 3 | peaks_variables [6.8s]
────────────────────────────────────────────────────────────────────────────────
Failure ('test_peaks_variables.R:16:5'): peaksData columns and peaksVariables match
colnames(res[[1L]]) not equal to peaksVariables(be).
Lengths differ: 5 is not 2
────────────────────────────────────────────────────────────────────────────────
⠏ | 0 | spectra_subsetting
⠋ | 1 | spectra_subsetting
⠴ | 16 | spectra_subsetting
⠧ | 28 | spectra_subsetting
⠏ | 40 | spectra_subsetting
⠹ | 53 | spectra_subsetting
⠸ | 64 | spectra_subsetting
⠴ | 76 | spectra_subsetting
⠼ | 85 | spectra_subsetting
⠋ | 91 | spectra_subsetting
⠏ | 100 | spectra_subsetting
⠇ | 109 | spectra_subsetting
⠧ | 118 | spectra_subsetting
⠦ | 127 | spectra_subsetting
⠼ | 135 | spectra_subsetting
⠹ | 143 | spectra_subsetting
⠼ | 155 | spectra_subsetting
⠦ | 167 | spectra_subsetting
⠋ | 181 | spectra_subsetting
⠴ | 196 | spectra_subsetting
⠧ | 208 | spectra_subsetting
⠧ | 218 | spectra_subsetting
⠴ | 226 | spectra_subsetting
⠼ | 235 | spectra_subsetting
⠸ | 244 | spectra_subsetting
⠦ | 257 | spectra_subsetting
⠇ | 269 | spectra_subsetting
⠹ | 283 | spectra_subsetting
⠙ | 292 | spectra_subsetting
⠋ | 301 | spectra_subsetting
⠏ | 310 | spectra_subsetting
⠇ | 319 | spectra_subsetting
⠧ | 328 | spectra_subsetting
⠦ | 337 | spectra_subsetting
⠇ | 349 | spectra_subsetting
⠸ | 364 | spectra_subsetting
⠴ | 376 | spectra_subsetting
⠋ | 391 | spectra_subsetting
⠹ | 403 | spectra_subsetting
⠼ | 415 | spectra_subsetting
⠼ | 425 | spectra_subsetting
⠼ | 435 | spectra_subsetting
⠙ | 442 | spectra_subsetting
⠋ | 451 | spectra_subsetting
⠏ | 460 | spectra_subsetting
⠇ | 469 | spectra_subsetting
⠋ | 481 | spectra_subsetting
⠏ | 490 | spectra_subsetting
⠙ | 502 | spectra_subsetting
⠸ | 514 | spectra_subsetting
⠦ | 527 | spectra_subsetting
⠼ | 535 | spectra_subsetting
⠸ | 544 | spectra_subsetting
⠹ | 553 | spectra_subsetting
⠙ | 562 | spectra_subsetting
⠋ | 571 | spectra_subsetting
⠏ | 580 | spectra_subsetting
⠙ | 592 | spectra_subsetting
⠸ | 604 | spectra_subsetting
⠹ | 613 | spectra_subsetting
⠸ | 624 | spectra_subsetting
⠸ | 634 | spectra_subsetting
⠹ | 643 | spectra_subsetting
⠇ | 649 | spectra_subsetting
⠧ | 658 | spectra_subsetting
⠦ | 667 | spectra_subsetting
⠴ | 676 | spectra_subsetting
⠙ | 682 | spectra_subsetting
⠋ | 691 | spectra_subsetting
⠹ | 703 | spectra_subsetting
⠸ | 714 | spectra_subsetting
⠙ | 722 | spectra_subsetting
⠴ | 736 | spectra_subsetting
⠧ | 748 | spectra_subsetting
⠧ | 758 | spectra_subsetting
⠇ | 769 | spectra_subsetting
⠧ | 778 | spectra_subsetting
⠦ | 787 | spectra_subsetting
⠴ | 796 | spectra_subsetting
⠧ | 808 | spectra_subsetting
⠙ | 822 | spectra_subsetting
⠴ | 836 | spectra_subsetting
⠏ | 850 | spectra_subsetting
⠙ | 862 | spectra_subsetting
⠸ | 874 | spectra_subsetting
⠦ | 887 | spectra_subsetting
⠴ | 896 | spectra_subsetting
⠏ | 910 | spectra_subsetting
⠙ | 922 | spectra_subsetting
⠋ | 931 | spectra_subsetting
⠹ | 943 | spectra_subsetting
⠙ | 952 | spectra_subsetting
⠋ | 961 | spectra_subsetting
⠏ | 970 | spectra_subsetting
⠇ | 979 | spectra_subsetting
⠋ | 991 | spectra_subsetting
⠋ | 1001 | spectra_subsetting
⠋ | 1011 | spectra_subsetting
⠋ | 1021 | spectra_subsetting
⠏ | 1030 | spectra_subsetting
⠼ | 1045 | spectra_subsetting
⠸ | 1054 | spectra_subsetting
⠹ | 1063 | spectra_subsetting
⠙ | 1072 | spectra_subsetting
⠋ | 1081 | spectra_subsetting
⠧ | 1088 | spectra_subsetting
⠇ | 1099 | spectra_subsetting
⠧ | 1108 | spectra_subsetting
⠦ | 1117 | spectra_subsetting
⠴ | 1126 | spectra_subsetting
⠹ | 1133 | spectra_subsetting
⠼ | 1145 | spectra_subsetting
⠇ | 1159 | spectra_subsetting
⠧ | 1168 | spectra_subsetting
⠏ | 1180 | spectra_subsetting
⠸ | 1194 | spectra_subsetting
⠸ | 1204 | spectra_subsetting
⠦ | 1217 | spectra_subsetting
⠇ | 1229 | spectra_subsetting
⠦ | 1237 | spectra_subsetting
⠇ | 1249 | spectra_subsetting
⠸ | 1264 | spectra_subsetting
⠹ | 1273 | spectra_subsetting
⠼ | 1285 | spectra_subsetting
⠦ | 1297 | spectra_subsetting
⠧ | 1308 | spectra_subsetting
⠋ | 1321 | spectra_subsetting
⠏ | 1330 | spectra_subsetting
⠇ | 1339 | spectra_subsetting
⠧ | 1348 | spectra_subsetting
⠏ | 1360 | spectra_subsetting
⠏ | 1370 | spectra_subsetting
⠋ | 1381 | spectra_subsetting
⠋ | 1391 | spectra_subsetting
⠏ | 1400 | spectra_subsetting
⠧ | 1408 | spectra_subsetting
⠦ | 1417 | spectra_subsetting
⠦ | 1427 | spectra_subsetting
⠧ | 1438 | spectra_subsetting
⠏ | 1450 | spectra_subsetting
⠙ | 1462 | spectra_subsetting
⠋ | 1471 | spectra_subsetting
⠏ | 1480 | spectra_subsetting
⠏ | 1490 | spectra_subsetting
⠇ | 1499 | spectra_subsetting
⠦ | 1507 | spectra_subsetting
⠇ | 1519 | spectra_subsetting
⠋ | 1531 | spectra_subsetting
⠏ | 1540 | spectra_subsetting
⠦ | 1547 | spectra_subsetting
⠧ | 1558 | spectra_subsetting
⠦ | 1567 | spectra_subsetting
⠦ | 1577 | spectra_subsetting
⠼ | 1585 | spectra_subsetting
⠸ | 1594 | spectra_subsetting
⠹ | 1603 | spectra_subsetting
⠙ | 1612 | spectra_subsetting
⠹ | 1623 | spectra_subsetting
⠙ | 1632 | spectra_subsetting
⠙ | 1642 | spectra_subsetting
⠋ | 1651 | spectra_subsetting
⠏ | 1660 | spectra_subsetting
⠇ | 1669 | spectra_subsetting
⠋ | 1681 | spectra_subsetting
⠼ | 1695 | spectra_subsetting
⠹ | 1703 | spectra_subsetting
⠦ | 1717 | spectra_subsetting
⠴ | 1726 | spectra_subsetting
⠧ | 1728 | spectra_subsetting
⠏ | 1730 | spectra_subsetting
⠙ | 1732 | spectra_subsetting
⠸ | 1734 | spectra_subsetting
⠴ | 1736 | spectra_subsetting
⠧ | 1738 | spectra_subsetting
⠏ | 1740 | spectra_subsetting
⠙ | 1742 | spectra_subsetting
⠸ | 1744 | spectra_subsetting
⠴ | 1746 | spectra_subsetting
⠧ | 1748 | spectra_subsetting
⠏ | 1750 | spectra_subsetting
⠙ | 1752 | spectra_subsetting
⠸ | 1754 | spectra_subsetting
⠴ | 1756 | spectra_subsetting
⠧ | 1758 | spectra_subsetting
⠏ | 1760 | spectra_subsetting
⠙ | 1762 | spectra_subsetting
⠹ | 1763 | spectra_subsetting
⠼ | 1765 | spectra_subsetting
⠦ | 1767 | spectra_subsetting
⠇ | 1769 | spectra_subsetting
⠋ | 1771 | spectra_subsetting
⠹ | 1773 | spectra_subsetting
⠼ | 1775 | spectra_subsetting
⠦ | 1777 | spectra_subsetting
⠇ | 1779 | spectra_subsetting
⠋ | 1781 | spectra_subsetting
⠹ | 1783 | spectra_subsetting
⠼ | 1785 | spectra_subsetting
⠦ | 1787 | spectra_subsetting
⠇ | 1789 | spectra_subsetting
⠋ | 1791 | spectra_subsetting
⠹ | 1793 | spectra_subsetting
⠼ | 1795 | spectra_subsetting
⠦ | 1797 | spectra_subsetting
⠇ | 1799 | spectra_subsetting
⠋ | 1801 | spectra_subsetting
⠙ | 1802 | spectra_subsetting
⠹ | 1803 | spectra_subsetting
⠼ | 1805 | spectra_subsetting
⠦ | 1807 | spectra_subsetting
⠇ | 1809 | spectra_subsetting
⠋ | 1811 | spectra_subsetting
⠹ | 1813 | spectra_subsetting
⠼ | 1815 | spectra_subsetting
⠧ | 1818 | spectra_subsetting
⠏ | 1820 | spectra_subsetting
⠙ | 1822 | spectra_subsetting
⠸ | 1824 | spectra_subsetting
⠴ | 1826 | spectra_subsetting
⠧ | 1828 | spectra_subsetting
⠏ | 1830 | spectra_subsetting
⠋ | 1831 | spectra_subsetting
⠹ | 1833 | spectra_subsetting
⠼ | 1835 | spectra_subsetting
⠦ | 1837 | spectra_subsetting
⠇ | 1839 | spectra_subsetting
⠋ | 1841 | spectra_subsetting
⠹ | 1843 | spectra_subsetting
⠼ | 1845 | spectra_subsetting
⠧ | 1848 | spectra_subsetting
⠏ | 1850 | spectra_subsetting
⠙ | 1852 | spectra_subsetting
⠹ | 1853 | spectra_subsetting
⠼ | 1855 | spectra_subsetting
⠦ | 1857 | spectra_subsetting
⠇ | 1859 | spectra_subsetting
⠋ | 1861 | spectra_subsetting
⠹ | 1863 | spectra_subsetting
⠼ | 1865 | spectra_subsetting
⠦ | 1867 | spectra_subsetting
⠇ | 1869 | spectra_subsetting
⠋ | 1871 | spectra_subsetting
⠹ | 1873 | spectra_subsetting
⠼ | 1875 | spectra_subsetting
⠦ | 1877 | spectra_subsetting
⠇ | 1879 | spectra_subsetting
⠋ | 1881 | spectra_subsetting
⠹ | 1883 | spectra_subsetting
⠴ | 1886 | spectra_subsetting
⠧ | 1888 | spectra_subsetting
⠏ | 1890 | spectra_subsetting
⠙ | 1892 | spectra_subsetting
⠸ | 1894 | spectra_subsetting
⠴ | 1896 | spectra_subsetting
⠧ | 1898 | spectra_subsetting
⠏ | 1900 | spectra_subsetting
⠙ | 1902 | spectra_subsetting
⠸ | 1904 | spectra_subsetting
⠴ | 1906 | spectra_subsetting
⠧ | 1908 | spectra_subsetting
⠏ | 1910 | spectra_subsetting
⠙ | 1912 | spectra_subsetting
⠼ | 1915 | spectra_subsetting
⠧ | 1918 | spectra_subsetting
⠏ | 1920 | spectra_subsetting
⠙ | 1922 | spectra_subsetting
⠸ | 1924 | spectra_subsetting
⠴ | 1926 | spectra_subsetting
⠧ | 1928 | spectra_subsetting
⠏ | 1930 | spectra_subsetting
⠙ | 1932 | spectra_subsetting
⠸ | 1934 | spectra_subsetting
⠴ | 1936 | spectra_subsetting
⠇ | 1939 | spectra_subsetting
⠋ | 1941 | spectra_subsetting
⠸ | 1944 | spectra_subsetting
⠦ | 1947 | spectra_subsetting
⠇ | 1949 | spectra_subsetting
⠋ | 1951 | spectra_subsetting
⠹ | 1953 | spectra_subsetting
⠼ | 1955 | spectra_subsetting
⠦ | 1957 | spectra_subsetting
⠇ | 1959 | spectra_subsetting
⠋ | 1961 | spectra_subsetting
⠹ | 1963 | spectra_subsetting
⠼ | 1965 | spectra_subsetting
⠦ | 1967 | spectra_subsetting
⠇ | 1969 | spectra_subsetting
⠋ | 1971 | spectra_subsetting
⠹ | 1973 | spectra_subsetting
⠼ | 1975 | spectra_subsetting
⠦ | 1977 | spectra_subsetting
⠇ | 1979 | spectra_subsetting
⠋ | 1981 | spectra_subsetting
⠹ | 1983 | spectra_subsetting
⠼ | 1985 | spectra_subsetting
⠦ | 1987 | spectra_subsetting
⠇ | 1989 | spectra_subsetting
⠋ | 1991 | spectra_subsetting
⠹ | 1993 | spectra_subsetting
⠼ | 1995 | spectra_subsetting
⠦ | 1997 | spectra_subsetting
⠇ | 1999 | spectra_subsetting
⠋ | 2001 | spectra_subsetting
⠹ | 2003 | spectra_subsetting
⠼ | 2005 | spectra_subsetting
⠦ | 2007 | spectra_subsetting
⠇ | 2009 | spectra_subsetting
⠋ | 2011 | spectra_subsetting
⠹ | 2013 | spectra_subsetting
⠼ | 2015 | spectra_subsetting
⠦ | 2017 | spectra_subsetting
⠇ | 2019 | spectra_subsetting
⠋ | 2021 | spectra_subsetting
⠹ | 2023 | spectra_subsetting
⠼ | 2025 | spectra_subsetting
⠦ | 2027 | spectra_subsetting
⠇ | 2029 | spectra_subsetting
⠋ | 2031 | spectra_subsetting
⠹ | 2033 | spectra_subsetting
⠼ | 2035 | spectra_subsetting
⠦ | 2037 | spectra_subsetting
⠇ | 2039 | spectra_subsetting
⠋ | 2041 | spectra_subsetting
⠹ | 2043 | spectra_subsetting
⠼ | 2045 | spectra_subsetting
⠦ | 2047 | spectra_subsetting
⠇ | 2049 | spectra_subsetting
⠋ | 2051 | spectra_subsetting
⠹ | 2053 | spectra_subsetting
⠼ | 2055 | spectra_subsetting
⠦ | 2057 | spectra_subsetting
⠇ | 2059 | spectra_subsetting
⠋ | 2061 | spectra_subsetting
⠹ | 2063 | spectra_subsetting
⠼ | 2065 | spectra_subsetting
⠦ | 2067 | spectra_subsetting
⠇ | 2069 | spectra_subsetting
⠋ | 2071 | spectra_subsetting
⠹ | 2073 | spectra_subsetting
⠼ | 2075 | spectra_subsetting
⠧ | 2078 | spectra_subsetting
⠏ | 2080 | spectra_subsetting
⠙ | 2082 | spectra_subsetting
⠸ | 2084 | spectra_subsetting
⠴ | 2086 | spectra_subsetting
⠧ | 2088 | spectra_subsetting
⠏ | 2090 | spectra_subsetting
⠙ | 2092 | spectra_subsetting
⠸ | 2094 | spectra_subsetting
⠴ | 2096 | spectra_subsetting
⠧ | 2098 | spectra_subsetting
⠏ | 2100 | spectra_subsetting
⠙ | 2102 | spectra_subsetting
⠸ | 2104 | spectra_subsetting
⠴ | 2106 | spectra_subsetting
⠧ | 2108 | spectra_subsetting
⠏ | 2110 | spectra_subsetting
⠙ | 2112 | spectra_subsetting
⠸ | 2114 | spectra_subsetting
⠴ | 2116 | spectra_subsetting
⠧ | 2118 | spectra_subsetting
⠏ | 2120 | spectra_subsetting
⠙ | 2122 | spectra_subsetting
⠸ | 2124 | spectra_subsetting
⠴ | 2126 | spectra_subsetting
⠧ | 2128 | spectra_subsetting
⠏ | 2130 | spectra_subsetting
⠙ | 2132 | spectra_subsetting
⠸ | 2134 | spectra_subsetting
⠴ | 2136 | spectra_subsetting
⠇ | 2139 | spectra_subsetting
⠋ | 2141 | spectra_subsetting
⠹ | 2143 | spectra_subsetting
⠼ | 2145 | spectra_subsetting
⠦ | 2147 | spectra_subsetting
⠇ | 2149 | spectra_subsetting
⠋ | 2151 | spectra_subsetting
⠹ | 2153 | spectra_subsetting
⠼ | 2155 | spectra_subsetting
⠦ | 2157 | spectra_subsetting
⠇ | 2159 | spectra_subsetting
⠋ | 2161 | spectra_subsetting
⠹ | 2163 | spectra_subsetting
⠼ | 2165 | spectra_subsetting
⠦ | 2167 | spectra_subsetting
⠇ | 2169 | spectra_subsetting
⠋ | 2171 | spectra_subsetting
⠹ | 2173 | spectra_subsetting
⠼ | 2175 | spectra_subsetting
⠦ | 2177 | spectra_subsetting
⠇ | 2179 | spectra_subsetting
⠏ | 2180 | spectra_subsetting
⠙ | 2182 | spectra_subsetting
⠸ | 2184 | spectra_subsetting
⠴ | 2186 | spectra_subsetting
⠇ | 2189 | spectra_subsetting
⠋ | 2191 | spectra_subsetting
⠹ | 2193 | spectra_subsetting
⠼ | 2195 | spectra_subsetting
⠦ | 2197 | spectra_subsetting
⠇ | 2199 | spectra_subsetting
⠋ | 2201 | spectra_subsetting
⠹ | 2203 | spectra_subsetting
⠼ | 2205 | spectra_subsetting
⠦ | 2207 | spectra_subsetting
⠇ | 2209 | spectra_subsetting
⠋ | 2211 | spectra_subsetting
⠹ | 2213 | spectra_subsetting
⠼ | 2215 | spectra_subsetting
⠧ | 2218 | spectra_subsetting
⠏ | 2220 | spectra_subsetting
⠹ | 2223 | spectra_subsetting
⠼ | 2225 | spectra_subsetting
⠧ | 2228 | spectra_subsetting
⠋ | 2231 | spectra_subsetting
⠹ | 2233 | spectra_subsetting
⠴ | 2236 | spectra_subsetting
⠇ | 2239 | spectra_subsetting
⠙ | 2242 | spectra_subsetting
⠼ | 2245 | spectra_subsetting
⠦ | 2247 | spectra_subsetting
⠇ | 2249 | spectra_subsetting
⠙ | 2252 | spectra_subsetting
⠸ | 2254 | spectra_subsetting
⠦ | 2257 | spectra_subsetting
⠇ | 2259 | spectra_subsetting
⠋ | 2261 | spectra_subsetting
⠹ | 2263 | spectra_subsetting
⠴ | 2266 | spectra_subsetting
⠧ | 2268 | spectra_subsetting
⠏ | 2270 | spectra_subsetting
⠹ | 2273 | spectra_subsetting
⠼ | 2275 | spectra_subsetting
⠧ | 2278 | spectra_subsetting
⠋ | 2281 | spectra_subsetting
⠹ | 2283 | spectra_subsetting
⠴ | 2286 | spectra_subsetting
⠧ | 2288 | spectra_subsetting
⠏ | 2290 | spectra_subsetting
⠹ | 2293 | spectra_subsetting
⠼ | 2295 | spectra_subsetting
⠦ | 2297 | spectra_subsetting
⠏ | 2300 | spectra_subsetting
⠸ | 2304 | spectra_subsetting
⠏ | 2310 | spectra_subsetting
⠼ | 2315 | spectra_subsetting
✔ | 2317 | spectra_subsetting [60.7s]
⠏ | 0 | spectra_variables
⠋ | 1 | spectra_variables
⠙ | 12 | spectra_variables
⠸ | 14 | spectra_variables
⠴ | 16 | spectra_variables
⠦ | 27 | spectra_variables
⠇ | 29 | spectra_variables
⠋ | 31 | spectra_variables
⠹ | 43 | spectra_variables
⠸ | 1 53 | spectra_variables
✖ | 1 1 61 | spectra_variables [25.4s]
────────────────────────────────────────────────────────────────────────────────
Failure ('test_spectra_variables.R:205:5'): peaksData
colnames(m) not equal to c("mz", "intensity").
Lengths differ: 5 is not 2
────────────────────────────────────────────────────────────────────────────────
══ Results ═════════════════════════════════════════════════════════════════════
Duration: 93.0 s
── Skipped tests (1) ───────────────────────────────────────────────────────────
• empty test (1): 'test_spectra_variables.R:262:1'
── Failed tests ────────────────────────────────────────────────────────────────
Failure ('test_peaks_variables.R:16:5'): peaksData columns and peaksVariables match
colnames(res[[1L]]) not equal to peaksVariables(be).
Lengths differ: 5 is not 2
Failure ('test_spectra_variables.R:205:5'): peaksData
colnames(m) not equal to c("mz", "intensity").
Lengths differ: 5 is not 2
[ FAIL 2 | WARN 0 | SKIP 1 | PASS 2381 ]
Error: Test failures
Execution halted
MsBackendRawFileReader.Rcheck/MsBackendRawFileReader-Ex.timings
| name | user | system | elapsed | |
| MsBackendRawFileReader-class | 0.90 | 0.03 | 13.77 | |
| MsBackendRawFileReader | 1.17 | 0.08 | 42.54 | |
| hidden_aliases | 0.33 | 0.00 | 12.96 | |
| ioBenchmark | 9.08 | 2.76 | 58.10 | |