Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-08-21 11:41 -0400 (Wed, 21 Aug 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4703 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4440 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4472 |
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4421 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4414 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1333/2255 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
MSstats 4.13.1 (landing page) Meena Choi
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | WARNINGS | ![]() | ||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | ![]() | ||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | ![]() | ||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | WARNINGS | OK | ![]() | ||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | WARNINGS | ||||||||||
To the developers/maintainers of the MSstats package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MSstats.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: MSstats |
Version: 4.13.1 |
Command: F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:MSstats.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings MSstats_4.13.1.tar.gz |
StartedAt: 2024-08-21 03:03:39 -0400 (Wed, 21 Aug 2024) |
EndedAt: 2024-08-21 03:06:43 -0400 (Wed, 21 Aug 2024) |
EllapsedTime: 184.3 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: MSstats.Rcheck |
Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:MSstats.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings MSstats_4.13.1.tar.gz ### ############################################################################## ############################################################################## * using log directory 'F:/biocbuild/bbs-3.20-bioc/meat/MSstats.Rcheck' * using R version 4.4.1 (2024-06-14 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * using option '--no-vignettes' * checking for file 'MSstats/DESCRIPTION' ... OK * this is package 'MSstats' version '4.13.1' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'MSstats' can be installed ... OK * used C++ compiler: 'G__~1.EXE (GCC) 13.2.0' * checking C++ specification ... NOTE Specified C++11: please drop specification unless essential * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking whether startup messages can be suppressed ... OK * checking dependencies in R code ... NOTE Namespace in Imports field not imported from: 'statmod' All declared Imports should be used. Unexported object imported by a ':::' call: 'MSstatsConvert:::.standardizeColnames' See the note in ?`:::` about the use of this operator. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE .plotHeatmap : <anonymous>: no visible global function definition for 'col2rgb' .plotProfile: no visible binding for global variable 'newABUNDANCE' .savePlotlyPlotHTML: no visible global function definition for 'zip' .setCensoredByThreshold: no visible binding for global variable 'any_censored' DIANNtoMSstatsFormat: no visible binding for global variable 'DetectionQValue' DIANNtoMSstatsFormat: no visible binding for global variable 'LibPGQValue' DIANNtoMSstatsFormat: no visible binding for global variable 'LibQValue' DIANNtoMSstatsFormat: no visible binding for global variable 'GlobalPGQValue' DIANNtoMSstatsFormat: no visible binding for global variable 'GlobalQValue' MSstatsPrepareForSummarization: no visible binding for global variable 'ref' MSstatsPrepareForSummarization: no visible binding for global variable 'LABEL' MSstatsPrepareForSummarization: no visible binding for global variable 'RUN' SDRFtoAnnotation: no visible binding for global variable '..extract_cols' extractSDRF: no visible binding for global variable '..extract_cols' Undefined global functions or variables: ..extract_cols DetectionQValue GlobalPGQValue GlobalQValue LABEL LibPGQValue LibQValue RUN any_censored col2rgb newABUNDANCE ref zip Consider adding importFrom("grDevices", "col2rgb") importFrom("utils", "zip") to your NAMESPACE file. * checking Rd files ... NOTE checkRd: (-1) MSstatsSummarizationOutput.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) MSstatsSummarizationOutput.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) MSstatsSummarizationOutput.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... WARNING Undocumented code objects: 'example_SDRF' Undocumented data sets: 'example_SDRF' All user-level objects in a package should have documentation entries. See chapter 'Writing R documentation files' in the 'Writing R Extensions' manual. * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... NOTE Documented arguments not in \usage in Rd file 'dot-documentFunction.Rd': 'removeFewMeasurements' 'useUniquePeptide' 'summaryforMultipleRows' 'removeProtein_with1Feature' 'removeProtein_with1Peptide' 'removeOxidationMpeptides' 'removeMpeptides' 'use_log_file' 'append' 'verbose' 'log_file_path' Documented arguments not in \usage in Rd file 'dot-getContrast.Rd': 'contrast_matrix' Documented arguments not in \usage in Rd file 'dot-getSingleProteinForProfile.Rd': 'dataProcess' Documented arguments not in \usage in Rd file 'dot-getWideTable.Rd': 'vector' Functions with \usage entries need to have the appropriate \alias entries, and all their arguments documented. The \usage entries must correspond to syntactically valid R code. See chapter 'Writing R documentation files' in the 'Writing R Extensions' manual. * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking compiled code ... NOTE Note: information on .o files for x64 is not available File 'F:/biocbuild/bbs-3.20-bioc/R/library/MSstats/libs/x64/MSstats.dll': Found '_exit', possibly from '_exit' (C) Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran) Found 'exit', possibly from 'exit' (C), 'stop' (Fortran) Compiled code should not call entry points which might terminate R nor write to stdout/stderr instead of to the console, nor use Fortran I/O nor system RNGs nor [v]sprintf. The detected symbols are linked into the code but might come from libraries and not actually be called. See 'Writing portable packages' in the 'Writing R Extensions' manual. * checking files in 'vignettes' ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed dataProcessPlots 7.52 0.09 7.64 dot-makeQCPlot 6.58 0.06 6.64 * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'tinytest.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 6 NOTEs See 'F:/biocbuild/bbs-3.20-bioc/meat/MSstats.Rcheck/00check.log' for details.
MSstats.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL MSstats ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.20-bioc/R/library' * installing *source* package 'MSstats' ... ** using staged installation ** libs using C++ compiler: 'G__~1.EXE (GCC) 13.2.0' using C++11 g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.20-bioc/R/library/RcppArmadillo/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.20-bioc/R/library/RcppArmadillo/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c common.cpp -o common.o g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.20-bioc/R/library/RcppArmadillo/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c comparison_contrasts.cpp -o comparison_contrasts.o g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.20-bioc/R/library/RcppArmadillo/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c linear_summary.cpp -o linear_summary.o g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.20-bioc/R/library/RcppArmadillo/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c median_polish.cpp -o median_polish.o g++ -shared -s -static-libgcc -o MSstats.dll tmp.def RcppExports.o common.o comparison_contrasts.o linear_summary.o median_polish.o -fopenmp -LF:/biocbuild/bbs-3.20-bioc/R/bin/x64 -lRlapack -LF:/biocbuild/bbs-3.20-bioc/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.20-bioc/R/bin/x64 -lR installing to F:/biocbuild/bbs-3.20-bioc/R/library/00LOCK-MSstats/00new/MSstats/libs/x64 ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MSstats)
MSstats.Rcheck/tests/tinytest.Rout
R version 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > if ( requireNamespace("tinytest", quietly=TRUE) ){ + tinytest::test_package("MSstats") + } Attaching package: 'MSstats' The following object is masked from 'package:grDevices': savePlot test_MSstatsdev.R............. 1 tests [0;32mOK[0m [0;36m90ms[0m INFO [2024-08-21 03:06:14] ** Features with one or two measurements across runs are removed. INFO [2024-08-21 03:06:14] ** Fractionation handled. INFO [2024-08-21 03:06:14] ** Updated quantification data to make balanced design. Missing values are marked by NA INFO [2024-08-21 03:06:14] ** Log2 intensities under cutoff = 3.776 were considered as censored missing values. INFO [2024-08-21 03:06:14] ** Log2 intensities = NA were considered as censored missing values. INFO [2024-08-21 03:06:14] ** Use all features that the dataset originally has. INFO [2024-08-21 03:06:14] # proteins: 2 # peptides per protein: 2-2 # features per peptide: 3-3 INFO [2024-08-21 03:06:14] 1 2 3 4 5 6 7 8 9 10 # runs 3 3 3 3 3 3 3 3 3 3 # bioreplicates 3 3 3 3 3 3 3 3 3 3 # tech. replicates 1 1 1 1 1 1 1 1 1 1 INFO [2024-08-21 03:06:14] == Start the summarization per subplot... | | | 0% | |=================================== | 50% | |======================================================================| 100% INFO [2024-08-21 03:06:14] == Summarization is done. test_dataProcess.R............ 0 tests INFO [2024-08-21 03:06:14] ** Features with one or two measurements across runs are removed. INFO [2024-08-21 03:06:14] ** Fractionation handled. INFO [2024-08-21 03:06:14] ** Updated quantification data to make balanced design. Missing values are marked by NA INFO [2024-08-21 03:06:14] ** Use all features that the dataset originally has. INFO [2024-08-21 03:06:14] # proteins: 6 # peptides per protein: 11-32 # features per peptide: 1-1 INFO [2024-08-21 03:06:14] C1 C2 C3 C4 C5 C6 # runs 3 3 3 3 3 3 # bioreplicates 1 1 1 1 1 1 # tech. replicates 3 3 3 3 3 3 INFO [2024-08-21 03:06:14] Some features are completely missing in at least one condition: D.GPLTGTYR_23_23_NA_NA, F.HFHWGSSDDQGSEHTVDR_402_402_NA_NA, G.PLTGTYR_8_8_NA_NA, H.SFNVEYDDSQDK_465_465_NA_NA, K.AVVQDPALKPL_156_156_NA_NA ... INFO [2024-08-21 03:06:14] == Start the summarization per subplot... | | | 0% | |============ | 17% | |======================= | 33% | |=================================== | 50% | |=============================================== | 67% | |========================================================== | 83% | |======================================================================| 100% INFO [2024-08-21 03:06:15] == Summarization is done. test_dataProcess.R............ 0 tests INFO [2024-08-21 03:06:15] ** Features with one or two measurements across runs are removed. INFO [2024-08-21 03:06:15] ** Fractionation handled. INFO [2024-08-21 03:06:15] ** Updated quantification data to make balanced design. Missing values are marked by NA INFO [2024-08-21 03:06:15] ** Log2 intensities under cutoff = 3.776 were considered as censored missing values. INFO [2024-08-21 03:06:15] ** Log2 intensities = NA were considered as censored missing values. INFO [2024-08-21 03:06:15] ** Use all features that the dataset originally has. INFO [2024-08-21 03:06:15] # proteins: 2 # peptides per protein: 2-2 # features per peptide: 3-3 INFO [2024-08-21 03:06:15] 1 2 3 4 5 6 7 8 9 10 # runs 3 3 3 3 3 3 3 3 3 3 # bioreplicates 3 3 3 3 3 3 3 3 3 3 # tech. replicates 1 1 1 1 1 1 1 1 1 1 INFO [2024-08-21 03:06:15] == Start the summarization per subplot... INFO [2024-08-21 03:06:19] == Summarization is done. test_dataProcess.R............ 0 tests INFO [2024-08-21 03:06:19] ** Features with one or two measurements across runs are removed. INFO [2024-08-21 03:06:19] ** Fractionation handled. INFO [2024-08-21 03:06:19] ** Updated quantification data to make balanced design. Missing values are marked by NA INFO [2024-08-21 03:06:19] ** Use all features that the dataset originally has. INFO [2024-08-21 03:06:19] # proteins: 6 # peptides per protein: 11-32 # features per peptide: 1-1 INFO [2024-08-21 03:06:19] C1 C2 C3 C4 C5 C6 # runs 3 3 3 3 3 3 # bioreplicates 1 1 1 1 1 1 # tech. replicates 3 3 3 3 3 3 INFO [2024-08-21 03:06:19] Some features are completely missing in at least one condition: D.GPLTGTYR_23_23_NA_NA, F.HFHWGSSDDQGSEHTVDR_402_402_NA_NA, G.PLTGTYR_8_8_NA_NA, H.SFNVEYDDSQDK_465_465_NA_NA, K.AVVQDPALKPL_156_156_NA_NA ... INFO [2024-08-21 03:06:19] == Start the summarization per subplot... INFO [2024-08-21 03:06:23] == Summarization is done. test_dataProcess.R............ 0 tests test_dataProcess.R............ 1 tests [0;32mOK[0m test_dataProcess.R............ 2 tests [0;32mOK[0m [0;34m8.9s[0m INFO [2024-08-21 03:06:23] ** Features with one or two measurements across runs are removed. INFO [2024-08-21 03:06:23] ** Fractionation handled. INFO [2024-08-21 03:06:23] ** Updated quantification data to make balanced design. Missing values are marked by NA INFO [2024-08-21 03:06:23] ** Log2 intensities under cutoff = 3.776 were considered as censored missing values. INFO [2024-08-21 03:06:23] ** Log2 intensities = NA were considered as censored missing values. INFO [2024-08-21 03:06:23] ** Use all features that the dataset originally has. INFO [2024-08-21 03:06:23] # proteins: 2 # peptides per protein: 2-2 # features per peptide: 3-3 INFO [2024-08-21 03:06:23] 1 2 3 4 5 6 7 8 9 10 # runs 3 3 3 3 3 3 3 3 3 3 # bioreplicates 3 3 3 3 3 3 3 3 3 3 # tech. replicates 1 1 1 1 1 1 1 1 1 1 INFO [2024-08-21 03:06:23] == Start the summarization per subplot... | | | 0% | |=================================== | 50% | |======================================================================| 100% INFO [2024-08-21 03:06:23] == Summarization is done. test_groupComparison.R........ 0 tests test_groupComparison.R........ 0 tests test_groupComparison.R........ 0 tests test_groupComparison.R........ 0 tests test_groupComparison.R........ 0 tests INFO [2024-08-21 03:06:23] == Start to test and get inference in whole plot ... | | | 0% | |=================================== | 50% | |======================================================================| 100% INFO [2024-08-21 03:06:23] == Comparisons for all proteins are done. test_groupComparison.R........ 0 tests INFO [2024-08-21 03:06:23] == Start to test and get inference in whole plot ... INFO [2024-08-21 03:06:27] == Comparisons for all proteins are done. test_groupComparison.R........ 0 tests test_groupComparison.R........ 1 tests [0;32mOK[0m [0;34m4.5s[0m [0;36m14ms[0m All ok, 4 results (13.5s) There were 50 or more warnings (use warnings() to see the first 50) > > proc.time() user system elapsed 4.50 0.60 17.31
MSstats.Rcheck/MSstats-Ex.timings
name | user | system | elapsed | |
DDARawData | 0 | 0 | 0 | |
DDARawData.Skyline | 0 | 0 | 0 | |
DIANNtoMSstatsFormat | 0 | 0 | 0 | |
DIARawData | 0 | 0 | 0 | |
DIAUmpiretoMSstatsFormat | 0.17 | 0.02 | 0.25 | |
FragPipetoMSstatsFormat | 0.06 | 0.00 | 0.07 | |
MSstatsGroupComparison | 0.35 | 0.02 | 0.36 | |
MSstatsGroupComparisonOutput | 0.19 | 0.03 | 0.22 | |
MSstatsGroupComparisonSingleProtein | 0.20 | 0.01 | 0.22 | |
MSstatsHandleMissing | 0.08 | 0.00 | 0.08 | |
MSstatsMergeFractions | 0.06 | 0.00 | 0.07 | |
MSstatsNormalize | 0.05 | 0.02 | 0.07 | |
MSstatsPrepareForDataProcess | 0.06 | 0.00 | 0.06 | |
MSstatsPrepareForGroupComparison | 0.13 | 0.00 | 0.14 | |
MSstatsPrepareForSummarization | 0.04 | 0.00 | 0.06 | |
MSstatsSelectFeatures | 0.27 | 0.01 | 0.30 | |
MSstatsSummarizationOutput | 0.30 | 0.02 | 0.33 | |
MSstatsSummarize | 0.34 | 0.01 | 0.36 | |
MSstatsSummarizeSingleLinear | 0.09 | 0.00 | 0.09 | |
MSstatsSummarizeSingleTMP | 0.13 | 0.00 | 0.13 | |
MaxQtoMSstatsFormat | 0.12 | 0.02 | 0.18 | |
OpenMStoMSstatsFormat | 0.03 | 0.03 | 0.08 | |
OpenSWATHtoMSstatsFormat | 0.07 | 0.00 | 0.08 | |
PDtoMSstatsFormat | 0.06 | 0.02 | 0.11 | |
ProgenesistoMSstatsFormat | 0.09 | 0.00 | 0.09 | |
SDRFtoAnnotation | 0.02 | 0.01 | 0.03 | |
SRMRawData | 0 | 0 | 0 | |
SkylinetoMSstatsFormat | 0.12 | 0.00 | 0.14 | |
SpectronauttoMSstatsFormat | 0.08 | 0.00 | 0.08 | |
checkRepeatedDesign | 0.14 | 0.00 | 0.14 | |
dataProcess | 0.42 | 0.07 | 0.50 | |
dataProcessPlots | 7.52 | 0.09 | 7.64 | |
designSampleSize | 0.37 | 0.05 | 0.42 | |
designSampleSizePlots | 0.36 | 0.03 | 0.39 | |
dot-makeQCPlot | 6.58 | 0.06 | 6.64 | |
extractSDRF | 0.17 | 0.06 | 0.24 | |
getProcessed | 0.09 | 0.00 | 0.09 | |
getSamplesInfo | 0.29 | 0.03 | 0.33 | |
groupComparison | 0.26 | 0.02 | 0.28 | |
groupComparisonPlots | 3.19 | 0.09 | 3.36 | |
makePeptidesDictionary | 0 | 0 | 0 | |
modelBasedQCPlots | 0.84 | 0.03 | 0.87 | |
quantification | 0.25 | 0.00 | 0.25 | |