Back to Multiple platform build/check report for BioC 3.20:   simplified   long
ABCDEFGHIJKL[M]NOPQRSTUVWXYZ

This page was generated on 2024-07-06 11:44 -0400 (Sat, 06 Jul 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4643
palomino6Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4414
lconwaymacOS 12.7.1 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4442
kjohnson3macOS 13.6.5 Venturaarm644.4.1 (2024-06-14) -- "Race for Your Life" 4391
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.4.1 (2024-06-14) -- "Race for Your Life" 3833
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1319/2243HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MSnbase 2.31.1  (landing page)
Laurent Gatto
Snapshot Date: 2024-07-05 14:00 -0400 (Fri, 05 Jul 2024)
git_url: https://git.bioconductor.org/packages/MSnbase
git_branch: devel
git_last_commit: d2b734e
git_last_commit_date: 2024-05-15 08:03:03 -0400 (Wed, 15 May 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino6Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.6.5 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    ERROR  skipped

BUILD results for MSnbase on kunpeng2

To the developers/maintainers of the MSnbase package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MSnbase.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: MSnbase
Version: 2.31.1
Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data MSnbase
StartedAt: 2024-07-06 00:25:16 -0000 (Sat, 06 Jul 2024)
EndedAt: 2024-07-06 00:29:20 -0000 (Sat, 06 Jul 2024)
EllapsedTime: 244.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data MSnbase
###
##############################################################################
##############################################################################


* checking for file ‘MSnbase/DESCRIPTION’ ... OK
* preparing ‘MSnbase’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘v01-MSnbase-demo.Rmd’ using rmarkdown

Quitting from lines 1812-1817 [plot2Davg] (v01-MSnbase-demo.Rmd)
Error: processing vignette 'v01-MSnbase-demo.Rmd' failed with diagnostics:
there is no package called 'pRoloc'
--- failed re-building ‘v01-MSnbase-demo.Rmd’

--- re-building ‘v02-MSnbase-io.Rmd’ using rmarkdown
--- finished re-building ‘v02-MSnbase-io.Rmd’

--- re-building ‘v03-MSnbase-centroiding.Rmd’ using rmarkdown
--- finished re-building ‘v03-MSnbase-centroiding.Rmd’

--- re-building ‘v04-benchmarking.Rmd’ using rmarkdown
--- finished re-building ‘v04-benchmarking.Rmd’

--- re-building ‘v05-MSnbase-development.Rmd’ using rmarkdown
--- finished re-building ‘v05-MSnbase-development.Rmd’

SUMMARY: processing the following file failed:
  ‘v01-MSnbase-demo.Rmd’

Error: Vignette re-building failed.
Execution halted