Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-08-21 11:41 -0400 (Wed, 21 Aug 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4703 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4440 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4472 |
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4421 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4414 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1174/2255 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
MEIGOR 1.39.0 (landing page) Jose A. Egea
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ![]() | ||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK | ![]() | ||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the MEIGOR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MEIGOR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: MEIGOR |
Version: 1.39.0 |
Command: F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:MEIGOR.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings MEIGOR_1.39.0.tar.gz |
StartedAt: 2024-08-21 02:24:17 -0400 (Wed, 21 Aug 2024) |
EndedAt: 2024-08-21 02:26:15 -0400 (Wed, 21 Aug 2024) |
EllapsedTime: 117.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: MEIGOR.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:MEIGOR.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings MEIGOR_1.39.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'F:/biocbuild/bbs-3.20-bioc/meat/MEIGOR.Rcheck' * using R version 4.4.1 (2024-06-14 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * using option '--no-vignettes' * checking for file 'MEIGOR/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'MEIGOR' version '1.39.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'MEIGOR' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE CeSSR: no visible global function definition for 'sd' CeSSR: no visible binding for global variable 'sd' between_chain_variances: no visible global function definition for 'var' essR: no visible global function definition for 'combn' essR: no visible global function definition for 'runif' essR_multistart: no visible global function definition for 'runif' essR_multistart: no visible global function definition for 'hist' estimate: no visible global function definition for 'runif' generate_new_position: no visible global function definition for 'rnorm' initialize: no visible global function definition for 'runif' initialize_and_pool: no visible binding for global variable 'mulichain' nls_fobj: no visible binding for global variable 'fobj_global' nls_fobj: no visible binding for '<<-' assignment to 'n_fun_eval' nls_fobj: no visible binding for global variable 'n_fun_eval' optim_fobj: no visible binding for global variable 'fobj_global' optim_fobj: no visible binding for '<<-' assignment to 'n_fun_eval' optim_fobj: no visible binding for global variable 'n_fun_eval' runBayesFit : prior: no visible binding for global variable 'prior_mean' runBayesFit : prior: no visible binding for global variable 'prior_var' rvnds_hamming: no visible global function definition for 'runif' solnp_eq: no visible binding for global variable 'fobj_global' solnp_eq: no visible binding for '<<-' assignment to 'n_fun_eval' solnp_eq: no visible binding for global variable 'n_fun_eval' solnp_eq: no visible binding for global variable 'neq_global' solnp_fobj: no visible binding for global variable 'fobj_global' solnp_fobj: no visible binding for '<<-' assignment to 'n_fun_eval' solnp_fobj: no visible binding for global variable 'n_fun_eval' solnp_ineq: no visible binding for global variable 'fobj_global' solnp_ineq: no visible binding for '<<-' assignment to 'n_fun_eval' solnp_ineq: no visible binding for global variable 'n_fun_eval' solnp_ineq: no visible binding for global variable 'neq_global' solnp_ineq: no visible binding for global variable 'nconst_global' ssm_beyond: no visible global function definition for 'runif' ssm_localsolver: no visible binding for '<<-' assignment to 'n_fun_eval' ssm_localsolver: no visible binding for '<<-' assignment to 'fobj_global' ssm_localsolver: no visible binding for '<<-' assignment to 'neq_global' ssm_localsolver: no visible binding for '<<-' assignment to 'nconst_global' ssm_localsolver: no visible binding for '<<-' assignment to 'extra_args' ssm_localsolver: no visible global function definition for 'optim' ssm_localsolver: no visible binding for global variable 'n_fun_eval' ssm_localsolver: no visible global function definition for 'nls' ssm_localsolver: no visible binding for global variable 'extra_args' ssm_localsolver: no visible global function definition for 'coef' within_chain_variances: no visible global function definition for 'var' Undefined global functions or variables: coef combn extra_args fobj_global hist mulichain n_fun_eval nconst_global neq_global nls optim prior_mean prior_var rnorm runif sd var Consider adding importFrom("graphics", "hist") importFrom("stats", "coef", "nls", "optim", "rnorm", "runif", "sd", "var") importFrom("utils", "combn") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... NOTE Invalid package aliases in Rd file 'BayesFit.Rd': 'BayesFit-package' Invalid package aliases in Rd file 'essR-MEIGOR.Rd': 'essR-package' * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... NOTE Argument items with no description in Rd file 'vns_defaults.Rd': '\dots' * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed cur_params 9.81 0.32 10.17 essR 9.91 0.18 10.10 runBayesFit 9.19 0.38 9.56 CeSSR 0.08 0.06 5.42 * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See 'F:/biocbuild/bbs-3.20-bioc/meat/MEIGOR.Rcheck/00check.log' for details.
MEIGOR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL MEIGOR ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.20-bioc/R/library' * installing *source* package 'MEIGOR' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MEIGOR)
MEIGOR.Rcheck/MEIGOR-Ex.timings
name | user | system | elapsed | |
CeSSR | 0.08 | 0.06 | 5.42 | |
MEIGO | 0.06 | 0.00 | 0.07 | |
cur_params | 9.81 | 0.32 | 10.17 | |
essR | 9.91 | 0.18 | 10.10 | |
runBayesFit | 9.19 | 0.38 | 9.56 | |
rvnds_hamming | 0.07 | 0.00 | 0.08 | |