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This page was generated on 2024-06-11 15:40 -0400 (Tue, 11 Jun 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" 4679
palomino4Windows Server 2022 Datacenterx644.4.0 RC (2024-04-16 r86468 ucrt) -- "Puppy Cup" 4414
merida1macOS 12.7.4 Montereyx86_644.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" 4441
kjohnson1macOS 13.6.6 Venturaarm644.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" 4394
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1162/2239HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MEDME 1.65.0  (landing page)
Mattia Pelizzola
Snapshot Date: 2024-06-09 14:00 -0400 (Sun, 09 Jun 2024)
git_url: https://git.bioconductor.org/packages/MEDME
git_branch: devel
git_last_commit: 3c269cd
git_last_commit_date: 2024-04-30 10:18:43 -0400 (Tue, 30 Apr 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
merida1macOS 12.7.4 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published


INSTALL results for MEDME on palomino4

To the developers/maintainers of the MEDME package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MEDME.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: MEDME
Version: 1.65.0
Command: F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL MEDME
StartedAt: 2024-06-09 16:40:06 -0400 (Sun, 09 Jun 2024)
EndedAt: 2024-06-09 16:40:36 -0400 (Sun, 09 Jun 2024)
EllapsedTime: 30.2 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
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###
### Running command:
###
###   F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL MEDME
###
##############################################################################
##############################################################################


* installing to library 'F:/biocbuild/bbs-3.20-bioc/R/library'
* installing *source* package 'MEDME' ...
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 13.2.0'
gcc  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c MEDMEweight.c -o MEDMEweight.o
MEDMEweight.c: In function 'MEDMEweight':
MEDMEweight.c:90:33: warning: 'B' may be used uninitialized [-Wmaybe-uninitialized]
   90 |       AMSfinal[i] = pow(2, pow( pow(E,B) * (D - Mlim) / (Mlim - C), 1/B));
      |                                 ^~~~~~~~
MEDMEweight.c:36:10: note: 'B' was declared here
   36 |   double B,C,D,E, Min, Max, Mlim;
      |          ^
MEDMEweight.c:89:9: warning: 'C' may be used uninitialized [-Wmaybe-uninitialized]
   89 |       if(Mlim < C) {Mlim = C;}
      |         ^
MEDMEweight.c:36:12: note: 'C' was declared here
   36 |   double B,C,D,E, Min, Max, Mlim;
      |            ^
MEDMEweight.c:88:9: warning: 'D' may be used uninitialized [-Wmaybe-uninitialized]
   88 |       if(Mlim > D) {Mlim = D;} // the model is only meaningful for MeDIPw in (C,D)
      |         ^
MEDMEweight.c:36:14: note: 'D' was declared here
   36 |   double B,C,D,E, Min, Max, Mlim;
      |              ^
MEDMEweight.c:90:33: warning: 'E' may be used uninitialized [-Wmaybe-uninitialized]
   90 |       AMSfinal[i] = pow(2, pow( pow(E,B) * (D - Mlim) / (Mlim - C), 1/B));
      |                                 ^~~~~~~~
MEDMEweight.c:36:16: note: 'E' was declared here
   36 |   double B,C,D,E, Min, Max, Mlim;
      |                ^
MEDMEweight.c:92:9: warning: 'Min' may be used uninitialized [-Wmaybe-uninitialized]
   92 |       if(AMSfinal[i] < Min) {AMSfinal[i] = Min;}
      |         ^
MEDMEweight.c:36:19: note: 'Min' was declared here
   36 |   double B,C,D,E, Min, Max, Mlim;
      |                   ^~~
MEDMEweight.c:91:9: warning: 'Max' may be used uninitialized [-Wmaybe-uninitialized]
   91 |       if(AMSfinal[i] > Max) {AMSfinal[i] = Max;}
      |         ^
MEDMEweight.c:36:24: note: 'Max' was declared here
   36 |   double B,C,D,E, Min, Max, Mlim;
      |                        ^~~
MEDMEweight.c:78:19: warning: 'weight' may be used uninitialized [-Wmaybe-uninitialized]
   78 |         weightSum = weightSum + weight;
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
MEDMEweight.c:30:10: note: 'weight' was declared here
   30 |   double weight, relPos;
      |          ^~~~~~
gcc -shared -s -static-libgcc -o MEDME.dll tmp.def MEDMEweight.o -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.20-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.20-bioc/R/library/00LOCK-MEDME/00new/MEDME/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (MEDME)