Shian Su
| Snapshot Date: 2024-07-12 14:00 -0400 (Fri, 12 Jul 2024) |
| git_url: https://git.bioconductor.org/packages/Glimma |
| git_branch: devel |
| git_last_commit: fe089cb |
| git_last_commit_date: 2024-04-30 10:50:10 -0400 (Tue, 30 Apr 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-07-13 11:43 -0400 (Sat, 13 Jul 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4677 |
| palomino6 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4416 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4444 |
| kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4393 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4373 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 853/2243 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| Glimma 2.15.0 (landing page) Shian Su
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino6 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | |||||||||
|
To the developers/maintainers of the Glimma package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Glimma.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: Glimma |
| Version: 2.15.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data Glimma |
| StartedAt: 2024-07-12 17:04:32 -0400 (Fri, 12 Jul 2024) |
| EndedAt: 2024-07-12 17:05:05 -0400 (Fri, 12 Jul 2024) |
| EllapsedTime: 33.3 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data Glimma ### ############################################################################## ############################################################################## * checking for file ‘Glimma/DESCRIPTION’ ... OK * preparing ‘Glimma’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘DESeq2.Rmd’ using rmarkdown --- finished re-building ‘DESeq2.Rmd’ --- re-building ‘limma_edger.Rmd’ using rmarkdown --- finished re-building ‘limma_edger.Rmd’ --- re-building ‘single_cell_edger.Rmd’ using rmarkdown Quitting from lines 42-49 [unnamed-chunk-2] (single_cell_edger.Rmd) Error: processing vignette 'single_cell_edger.Rmd' failed with diagnostics: failed to load resource name: AH73905 title: Ensembl 97 EnsDb for Mus musculus reason: Required tables gene, tx, tx2exon, exon, chromosome are not present in the database! --- failed re-building ‘single_cell_edger.Rmd’ SUMMARY: processing the following file failed: ‘single_cell_edger.Rmd’ Error: Vignette re-building failed. Execution halted