| Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-10-03 11:49 -0400 (Thu, 03 Oct 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| teran2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4461 |
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4716 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4466 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4498 |
| kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4446 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4445 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 884/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| GOstats 2.71.0 (landing page) Bioconductor Package Maintainer
| teran2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | ERROR | skipped | ||||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | TIMEOUT | skipped | skipped | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK |  | ||||||||
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | ERROR | skipped | ||||||||||
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To the developers/maintainers of the GOstats package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GOstats.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: GOstats |
| Version: 2.71.0 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data GOstats |
| StartedAt: 2024-10-02 22:51:54 -0000 (Wed, 02 Oct 2024) |
| EndedAt: 2024-10-02 23:07:41 -0000 (Wed, 02 Oct 2024) |
| EllapsedTime: 947.4 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data GOstats ### ############################################################################## ############################################################################## * checking for file ‘GOstats/DESCRIPTION’ ... OK * preparing ‘GOstats’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘GOstatsForUnsupportedOrganisms.Rmd’ using rmarkdown Warning: call dbDisconnect() when finished working with a connection [WARNING] This document format requires a nonempty <title> element. Defaulting to 'GOstatsForUnsupportedOrganisms.knit' as the title. To specify a title, use 'title' in metadata or --metadata title="...". --- finished re-building ‘GOstatsForUnsupportedOrganisms.Rmd’ --- re-building ‘GOstatsHyperG.Rmd’ using rmarkdown --- finished re-building ‘GOstatsHyperG.Rmd’ --- re-building ‘GOvis.Rmd’ using rmarkdown Warning in doTryCatch(return(expr), name, parentenv, handler) : "nodeAttrs" is not a graphical parameter Warning in doTryCatch(return(expr), name, parentenv, handler) : zero-length arrow is of indeterminate angle and so skipped Warning in doTryCatch(return(expr), name, parentenv, handler) : zero-length arrow is of indeterminate angle and so skipped Warning in doTryCatch(return(expr), name, parentenv, handler) : zero-length arrow is of indeterminate angle and so skipped Warning in doTryCatch(return(expr), name, parentenv, handler) : zero-length arrow is of indeterminate angle and so skipped Warning in doTryCatch(return(expr), name, parentenv, handler) : zero-length arrow is of indeterminate angle and so skipped Warning in doTryCatch(return(expr), name, parentenv, handler) : zero-length arrow is of indeterminate angle and so skipped Warning in doTryCatch(return(expr), name, parentenv, handler) : zero-length arrow is of indeterminate angle and so skipped Warning in doTryCatch(return(expr), name, parentenv, handler) : zero-length arrow is of indeterminate angle and so skipped