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This page was generated on 2024-07-06 11:39 -0400 (Sat, 06 Jul 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4643
palomino6Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4414
lconwaymacOS 12.7.1 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4442
kjohnson3macOS 13.6.5 Venturaarm644.4.1 (2024-06-14) -- "Race for Your Life" 4391
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.4.1 (2024-06-14) -- "Race for Your Life" 3833
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 516/2243HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DeepTarget 0.99.19  (landing page)
Trinh Nguyen
Snapshot Date: 2024-07-05 14:00 -0400 (Fri, 05 Jul 2024)
git_url: https://git.bioconductor.org/packages/DeepTarget
git_branch: devel
git_last_commit: c151b95
git_last_commit_date: 2024-04-23 11:14:21 -0400 (Tue, 23 Apr 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino6Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.6.5 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    OK  

BUILD results for DeepTarget on palomino6

To the developers/maintainers of the DeepTarget package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DeepTarget.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: DeepTarget
Version: 0.99.19
Command: chmod a+r DeepTarget -R && C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data DeepTarget
StartedAt: 2024-07-05 17:27:23 -0400 (Fri, 05 Jul 2024)
EndedAt: 2024-07-05 17:27:56 -0400 (Fri, 05 Jul 2024)
EllapsedTime: 33.5 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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###
### Running command:
###
###   chmod a+r DeepTarget -R && C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data DeepTarget
###
##############################################################################
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* checking for file 'DeepTarget/DESCRIPTION' ... OK
* preparing 'DeepTarget':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'DeepTarget_Vignette.Rmd' using rmarkdown
Warning in gzfile(file, "wb") :
  cannot open compressed file 'DeepTarget_Vignette_cache/html/Computing a correlation between the every gene crispr KO vs each drug response for all interesting drugs_a2f2d4f59ae87242c85f0082bec0ca75.RData', probable reason 'No such file or directory'

Quitting from lines 86-96 [Computing a correlation between the every gene crispr KO vs each drug response for all interesting drugs] (DeepTarget_Vignette.Rmd)
Error: processing vignette 'DeepTarget_Vignette.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building 'DeepTarget_Vignette.Rmd'

SUMMARY: processing the following file failed:
  'DeepTarget_Vignette.Rmd'

Error: Vignette re-building failed.
Execution halted