Back to Multiple platform build/check report for BioC 3.20:   simplified   long
ABC[D]EFGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2024-11-02 12:07 -0400 (Sat, 02 Nov 2024).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.1 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4500
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4763
palomino8Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4505
lconwaymacOS 12.7.1 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4538
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.4.1 (2024-06-14) -- "Race for Your Life" 4493
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 594/2289HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DNAcopy 1.80.0  (landing page)
Venkatraman E. Seshan
Snapshot Date: 2024-11-01 13:40 -0400 (Fri, 01 Nov 2024)
git_url: https://git.bioconductor.org/packages/DNAcopy
git_branch: RELEASE_3_20
git_last_commit: f89937b
git_last_commit_date: 2024-10-29 09:22:58 -0400 (Tue, 29 Oct 2024)
teran2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  
palomino8Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    OK  

INSTALL results for DNAcopy on kunpeng2

To the developers/maintainers of the DNAcopy package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DNAcopy.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: DNAcopy
Version: 1.80.0
Command: /home/biocbuild/R/R/bin/R CMD INSTALL DNAcopy
StartedAt: 2024-11-01 20:02:15 -0000 (Fri, 01 Nov 2024)
EndedAt: 2024-11-01 20:02:31 -0000 (Fri, 01 Nov 2024)
EllapsedTime: 16.3 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD INSTALL DNAcopy
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/R/R-4.4.1/site-library’
* installing *source* package ‘DNAcopy’ ...
** using staged installation
** libs
using C compiler: ‘gcc (conda-forge gcc 14.2.0-1) 14.2.0’
using Fortran compiler: ‘GNU Fortran (GCC) 10.3.1’
gfortran  -fPIC  -g -O2  -Wall -c cbsWtstats.f -o cbsWtstats.o
cbsWtstats.f:283:72:

  283 |       iseg(2) = tmaxj
      |                                                                        ^
Warning: ‘tmaxj’ may be used uninitialized in this function [-Wmaybe-uninitialized]
cbsWtstats.f:282:72:

  282 |       iseg(1) = tmaxi
      |                                                                        ^
Warning: ‘tmaxi’ may be used uninitialized in this function [-Wmaybe-uninitialized]
gfortran  -fPIC  -g -O2  -Wall -c cbststats.f -o cbststats.o
cbststats.f:258:72:

  258 |                      tmaxj = sxmxi + i2j
      |                                                                        ^
Warning: ‘sxmxi’ may be used uninitialized in this function [-Wmaybe-uninitialized]
gfortran  -fPIC  -g -O2  -Wall -c changepoints-wtd.f -o changepoints-wtd.o
gfortran  -fPIC  -g -O2  -Wall -c changepoints.f -o changepoints.o
gfortran  -fPIC  -g -O2  -Wall -c esegment.f -o esegment.o
gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG   -I/usr/local/include    -fPIC  -g -O2  -Wall -c flchoose.c -o flchoose.o
gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG   -I/usr/local/include    -fPIC  -g -O2  -Wall -c fphyper.c -o fphyper.o
gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG   -I/usr/local/include    -fPIC  -g -O2  -Wall -c fpnorm.c -o fpnorm.o
gfortran  -fPIC  -g -O2  -Wall -c getbdry.f -o getbdry.o
gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG   -I/usr/local/include    -fPIC  -g -O2  -Wall -c init.c -o init.o
gfortran  -fPIC  -g -O2  -Wall -c prune.f -o prune.o
gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG   -I/usr/local/include    -fPIC  -g -O2  -Wall -c rshared.c -o rshared.o
gfortran  -fPIC  -g -O2  -Wall -c segmentp.f -o segmentp.o
gfortran  -fPIC  -g -O2  -Wall -c smoothCNA.f -o smoothCNA.o
gfortran  -fPIC  -g -O2  -Wall -c tailprobs.f -o tailprobs.o
gcc -shared -L/home/biocbuild/R/R-4.4.1/lib -L/usr/local/lib -o DNAcopy.so cbsWtstats.o cbststats.o changepoints-wtd.o changepoints.o esegment.o flchoose.o fphyper.o fpnorm.o getbdry.o init.o prune.o rshared.o segmentp.o smoothCNA.o tailprobs.o -L/usr/lib/gcc/aarch64-linux-gnu/10.3.1 -lgfortran -lm -L/home/biocbuild/R/R-4.4.1/lib -lR
installing to /home/biocbuild/R/R-4.4.1/site-library/00LOCK-DNAcopy/00new/DNAcopy/libs
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (DNAcopy)