Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-06-11 15:41 -0400 (Tue, 11 Jun 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" | 4679 |
palomino4 | Windows Server 2022 Datacenter | x64 | 4.4.0 RC (2024-04-16 r86468 ucrt) -- "Puppy Cup" | 4414 |
merida1 | macOS 12.7.4 Monterey | x86_64 | 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" | 4441 |
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" | 4394 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 506/2239 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
DECIPHER 3.1.2 (landing page) Erik Wright
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ![]() | ||||||||
merida1 | macOS 12.7.4 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | ![]() | ||||||||
To the developers/maintainers of the DECIPHER package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DECIPHER.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: DECIPHER |
Version: 3.1.2 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:DECIPHER.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings DECIPHER_3.1.2.tar.gz |
StartedAt: 2024-06-10 02:20:57 -0400 (Mon, 10 Jun 2024) |
EndedAt: 2024-06-10 02:58:13 -0400 (Mon, 10 Jun 2024) |
EllapsedTime: 2235.4 seconds |
RetCode: 0 |
Status: OK |
CheckDir: DECIPHER.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:DECIPHER.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings DECIPHER_3.1.2.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/DECIPHER.Rcheck’ * using R version 4.4.0 Patched (2024-04-24 r86482) * using platform: x86_64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Monterey 12.7.4 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘DECIPHER/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘DECIPHER’ version ‘3.1.2’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘DECIPHER’ can be installed ... OK * used C compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’ * used SDK: ‘MacOSX11.3.sdk’ * checking installed package size ... NOTE installed size is 12.5Mb sub-directories of 1Mb or more: R 1.5Mb data 7.5Mb extdata 2.5Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE AlignSeqs: no visible binding for global variable ‘deltaGrulesRNA’ DesignSignatures: no visible binding for global variable ‘deltaHrules’ FindGenes: no visible binding for global variable ‘deltaHrulesRNA’ FindNonCoding: no visible binding for global variable ‘deltaHrulesRNA’ LearnNonCoding: no visible binding for global variable ‘deltaHrulesRNA’ PredictDBN: no visible binding for global variable ‘deltaGrulesRNA’ TreeLine: multiple local function definitions for ‘.minimize’ with different formal arguments Undefined global functions or variables: deltaGrulesRNA deltaHrules deltaHrulesRNA * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking compiled code ... NOTE Note: information on .o files is not available * checking sizes of PDF files under ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed AlignSeqs 483.006 6.853 589.005 LearnNonCoding 170.153 5.403 199.182 MapCharacters 142.796 1.105 157.558 FindNonCoding 84.938 5.386 101.951 FindGenes 74.344 1.431 83.600 WriteGenes 73.566 1.941 84.593 ExtractGenes 73.791 1.417 86.156 Genes-class 73.189 1.848 84.541 DetectRepeats 67.776 0.467 77.662 BrowseSeqs 57.598 0.842 76.741 CorrectFrameshifts 36.780 1.380 46.583 StaggerAlignment 26.931 1.085 39.320 AlignTranslation 25.974 0.321 32.264 TreeLine 19.801 0.390 22.811 Taxa-class 17.422 0.609 19.554 IdTaxa 15.561 0.444 18.045 LearnTaxa 9.979 2.209 14.313 Clusterize 10.875 0.524 14.246 ScoreAlignment 10.965 0.234 13.662 Array2Matrix 9.392 0.072 16.566 TileSeqs 9.243 0.060 10.114 DesignArray 9.174 0.046 10.857 AlignPairs 6.420 0.177 7.622 AlignSynteny 6.260 0.057 7.681 TrainingSet_16S 5.258 0.080 5.787 Synteny-class 4.498 0.061 6.026 * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See ‘/Users/biocbuild/bbs-3.20-bioc/meat/DECIPHER.Rcheck/00check.log’ for details.
DECIPHER.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL DECIPHER ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’ * installing *source* package ‘DECIPHER’ ... ** using staged installation ** libs using C compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’ using SDK: ‘MacOSX11.3.sdk’ clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c AlignProfiles.c -o AlignProfiles.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c AssignIndels.c -o AssignIndels.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Biostrings_stubs.c -o Biostrings_stubs.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c CalculateDeltaG.c -o CalculateDeltaG.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c CalculateFISH.c -o CalculateFISH.o CalculateFISH.c:26:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -11.5, -7.8, -7, -8.3, ^~~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:27:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -10.4, -12.8, -16.3, -9.1, ^~~~~~~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:28:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -8.6, -8, -9.3, -5.9, ^~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:29:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -7.8, -5.5, -9, -7.8 ^~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:32:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -36.4, -21.6, -19.7, -23.9, ^~~~~~~~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:33:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -28.4, -31.9, -47.1, -23.5, ^~~~~~~~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:34:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -22.9, -17.1, -23.2, -12.3, ^~~~~~~~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:35:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -23.2, -13.5, -26.1, -21.9 ^~~~~~~~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:38:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -7.9, -8.4, -7.8, -7.2, ^~~~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:39:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -8.5, -8, -10.6, -7.8, ^~~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:40:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -8.2, -9.8, -8, -8.4, ^~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:41:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -7.2, -8.2, -8.5, -7.9 ^~~~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:44:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -22.2, -22.4, -21, -20.4, ^~~~~~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:45:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -22.7, -19.9, -27.2, -21, ^~~~~~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:46:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -22.2, -24.4, -19.9, -22.4, ^~~~~~~~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:47:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -21.3, -22.2, -22.7, -22.2 ^~~~~~~~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:50:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -6.6, -10.17, -7.65, -5.76, ^~~~~~~~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:51:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -10.56, -12.21, -7.95, -7.65, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:52:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -13.37, -14.21, -12.21, -10.17, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:53:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -8.11, -13.37, -10.56, -6.6 ^~~~~~~~~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:56:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -18.38, -26.03, -19.18, -15.67, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:57:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -28.25, -30.02, -19.18, -19.18, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:58:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -35.68, -34.85, -30.02, -26.03, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:59:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -22.59, -35.68, -28.25, -18.38 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } 24 warnings generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c ChainSegments.c -o ChainSegments.o ChainSegments.c:714:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ 1 warning generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Cluster.c -o Cluster.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c ClusterML.c -o ClusterML.o ClusterML.c:1143:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ 1 warning generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c ClusterMP.c -o ClusterMP.o ClusterMP.c:109:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ 1 warning generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Compositions.c -o Compositions.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Compression.c -o Compression.o Compression.c:520:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ Compression.c:1407:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ Compression.c:1705:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ 3 warnings generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c ConsensusSequence.c -o ConsensusSequence.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c DesignProbes.c -o DesignProbes.o DesignProbes.c:71:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -0.816507461,-2.5401714,-1.647430026,-1.184658548 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:72:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,-1.854740485,-2.479102613,-2.826248182,-1.647430026 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:73:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,-2.48761723,-4.694133177,-2.479102613,-2.5401714 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:74:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,-0.495794417,-2.48761723,-1.854740485,-0.816507461 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:78:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -0.141370102,-0.439805276,-0.285236035,-0.205111781 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:79:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,-0.321129768,-0.429231826,-0.48933661,-0.285236035 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:80:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,-0.430706047,-0.812742218,-0.429231826,-0.439805276 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:81:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,-0.085841845,-0.430706047,-0.321129768,-0.141370102 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:85:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] 0,0,0,0 ^~~~~~~ { } DesignProbes.c:86:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.545032445,1.254355018,1.491691514,1.329138183 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:87:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.150635633,0.582415494,1.075877275,1.187937642 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:88:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.203555051,1.001540513,0.864287715,0.717125848 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:89:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.75,0.65,0.69,0.78 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:85:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] 0,0,0,0 ^~~~~~~ { DesignProbes.c:90:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.630005348,0.18553379,0.730763505,0.709272397 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:91:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { } DesignProbes.c:92:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.856582783,-0.143236405,0.716721488,0.603652831 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:93:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.851622883,0.653168672,0.676545316,1.187937642 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:94:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.75,0.65,0.69,0.78 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:90:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.630005348,0.18553379,0.730763505,0.709272397 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { DesignProbes.c:95:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.231861002,0.746214538,1.087821916,0.989140748 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:96:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.822113278,1.270687029,1.336192565,1.364584949 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:97:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { } DesignProbes.c:98:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.443665704,1.385046493,1.256013166,1.329138183 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:99:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.75,0.65,0.69,0.78 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:95:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.231861002,0.746214538,1.087821916,0.989140748 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { DesignProbes.c:100:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.478009492,0.882097231,1.20450984,1.061002478 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:101:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.496720812,0.846496194,0.967868114,0.989140748 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:102:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.766581547,-0.024857805,0.50754303,0.709272397 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:103:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { } DesignProbes.c:104:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.75,0.65,0.69,0.78 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:100:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.478009492,0.882097231,1.20450984,1.061002478 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { DesignProbes.c:105:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.75,0.65,0.69,0.78 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:106:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.75,0.65,0.69,0.78 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:107:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.75,0.65,0.69,0.78 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:108:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.76,0.65,0.69,0.78 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:109:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { } DesignProbes.c:105:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.75,0.65,0.69,0.78 ^~~~~~~~~~~~~~~~~~~ { DesignProbes.c:85:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] 0,0,0,0 ^~~~~~~ { DesignProbes.c:110:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { } DesignProbes.c:111:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.295827995,0.84547091,0.91019099,1.256013166 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:112:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.755889609,0.241428373,0.396379912,0.676545316 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:113:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.99945386,0.740323132,0.435659206,0.864287715 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:114:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.65,0.55,0.48,0.69 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:110:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { DesignProbes.c:115:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.843147406,0.101248351,0.49063599,0.50754303 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:116:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { } DesignProbes.c:117:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.0651638,0.249934344,0.699352949,0.716721488 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:118:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.871921533,0.59458138,0.396379912,1.075877275 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:119:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.65,0.56,0.49,0.69 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:115:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.843147406,0.101248351,0.49063599,0.50754303 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { DesignProbes.c:120:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.07531714,0.318907854,0.653287717,0.967868114 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:121:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.099899195,0.730184613,0.661798984,1.336192565 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:122:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { } DesignProbes.c:123:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.45897431,1.318532145,0.91019099,1.491691514 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:124:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.65,0.56,0.49,0.69 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:120:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.07531714,0.318907854,0.653287717,0.967868114 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { DesignProbes.c:125:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.242135174,0.894838095,1.108555445,1.20450984 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:126:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.911428974,0.524430101,0.653287717,1.087821916 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:127:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.503209827,0.274849491,0.49063599,0.730763505 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:128:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { } DesignProbes.c:129:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.65,0.55,0.48,0.69 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:125:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.242135174,0.894838095,1.108555445,1.20450984 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { DesignProbes.c:130:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.65,0.55,0.48,0.69 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:131:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.65,0.56,0.49,0.69 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:132:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.65,0.56,0.49,0.69 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:133:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.65,0.55,0.48,0.69 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:134:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { } DesignProbes.c:130:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.65,0.55,0.48,0.69 ^~~~~~~~~~~~~~~~~~~ { DesignProbes.c:110:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { DesignProbes.c:135:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { } DesignProbes.c:136:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.100661785,0.969784756,1.318532145,1.385046493 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:137:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.565895968,-0.060347902,0.59458138,0.653168672 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:138:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.782168488,0.788161238,0.740323132,1.001540513 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:139:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.68,0.46,0.55,0.65 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:135:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { DesignProbes.c:140:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.468913405,-0.469855984,0.274849491,-0.024857805 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:141:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { } DesignProbes.c:142:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.258195131,-0.70438632,0.249934344,-0.143236405 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:143:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.502914193,-0.060347902,0.241428373,0.582415494 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:144:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.68,0.47,0.56,0.65 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:140:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.468913405,-0.469855984,0.274849491,-0.024857805 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { DesignProbes.c:145:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.584083861,0.258975454,0.524430101,0.846496194 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:146:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.968040559,0.797499702,0.730184613,1.270687029 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:147:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { } DesignProbes.c:148:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.081040749,0.969784756,0.84547091,1.254355018 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:149:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.68,0.47,0.56,0.65 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:145:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.584083861,0.258975454,0.524430101,0.846496194 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { DesignProbes.c:150:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.048553951,0.728354541,0.894838095,0.882097231 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:151:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.88611252,0.258975454,0.318907854,0.746214538 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:152:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.239520858,-0.469855984,0.101248351,0.18553379 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:153:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { } DesignProbes.c:154:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.68,0.46,0.55,0.65 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:150:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.048553951,0.728354541,0.894838095,0.882097231 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { DesignProbes.c:155:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.68,0.46,0.55,0.65 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:156:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.68,0.47,0.56,0.65 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:157:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.68,0.47,0.56,0.65 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:158:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.68,0.46,0.55,0.65 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:159:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { } DesignProbes.c:155:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.68,0.46,0.55,0.65 ^~~~~~~~~~~~~~~~~~~ { DesignProbes.c:135:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { DesignProbes.c:160:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { } DesignProbes.c:161:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.566899704,1.081040749,1.45897431,1.443665704 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:162:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.976725675,0.502914193,0.871921533,0.851622883 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:163:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.482046826,0.782168488,0.99945386,1.203555051 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:164:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.85,0.68,0.65,0.76 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:160:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { DesignProbes.c:165:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.798628781,0.239520858,0.503209827,0.766581547 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:166:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { } DesignProbes.c:167:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.141098246,0.258195131,1.0651638,0.856582783 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:168:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.976725675,0.565895968,0.755889609,1.150635633 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:169:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.85,0.68,0.65,0.75 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:165:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.798628781,0.239520858,0.503209827,0.766581547 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { DesignProbes.c:170:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.125403302,0.88611252,0.911428974,1.496720812 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:171:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.68169282,0.968040559,1.099899195,1.822113278 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:172:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { } DesignProbes.c:173:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.566899704,1.100661785,1.295827995,1.545032445 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:174:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.85,0.68,0.65,0.75 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:170:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.125403302,0.88611252,0.911428974,1.496720812 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { DesignProbes.c:175:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.35948517,1.048553951,1.242135174,1.478009492 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:176:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.125403302,0.584083861,1.07531714,1.231861002 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:177:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.798628781,0.468913405,0.843147406,0.630005348 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:178:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { } DesignProbes.c:179:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.85,0.68,0.65,0.75 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:175:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.35948517,1.048553951,1.242135174,1.478009492 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { DesignProbes.c:180:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.85,0.68,0.65,0.75 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:181:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.85,0.68,0.65,0.75 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:182:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.85,0.68,0.65,0.75 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:183:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.85,0.68,0.65,0.75 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:184:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { } DesignProbes.c:180:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.85,0.68,0.65,0.75 ^~~~~~~~~~~~~~~~~~~ { DesignProbes.c:160:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { DesignProbes.c:58:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ 133 warnings generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Diff.c -o Diff.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c DistanceMatrix.c -o DistanceMatrix.o DistanceMatrix.c:319:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ DistanceMatrix.c:905:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ 2 warnings generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c EnumerateSequence.c -o EnumerateSequence.o EnumerateSequence.c:297:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ EnumerateSequence.c:870:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ 2 warnings generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c ExpandAmbiguities.c -o ExpandAmbiguities.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c FindFrameshifts.c -o FindFrameshifts.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c GeneFinding.c -o GeneFinding.o GeneFinding.c:3260:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ GeneFinding.c:3337:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ GeneFinding.c:3394:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ 3 warnings generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c GetPools.c -o GetPools.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Import.c -o Import.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c InformationContent.c -o InformationContent.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c IntDist.c -o IntDist.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c ManipulateXStringSet.c -o ManipulateXStringSet.o ManipulateXStringSet.c:54:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ ManipulateXStringSet.c:688:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ ManipulateXStringSet.c:813:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ 3 warnings generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c MeltPolymer.c -o MeltPolymer.o MeltPolymer.c:80:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -7.9,-8.4,-7.8,-7.2 ^~~~~~~~~~~~~~~~~~~ { } MeltPolymer.c:81:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,-8.5,-8.0,-10.6,-7.8 ^~~~~~~~~~~~~~~~~~~~ { } MeltPolymer.c:82:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,-8.2,-9.8,-8.0,-8.4 ^~~~~~~~~~~~~~~~~~~ { } MeltPolymer.c:83:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,-7.2,-8.2,-8.5,-7.9 ^~~~~~~~~~~~~~~~~~~ { } MeltPolymer.c:89:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -22.2,-22.4,-21.0,-20.4 ^~~~~~~~~~~~~~~~~~~~~~~ { } MeltPolymer.c:90:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,-22.7,-19.9,-27.2,-21.0 ^~~~~~~~~~~~~~~~~~~~~~~ { } MeltPolymer.c:91:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,-22.2,-24.4,-19.9,-22.4 ^~~~~~~~~~~~~~~~~~~~~~~ { } MeltPolymer.c:92:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,-21.3,-22.2,-22.7,-22.2 ^~~~~~~~~~~~~~~~~~~~~~~ { } 8 warnings generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c MovingAverage.c -o MovingAverage.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c NNLS.c -o NNLS.o NNLS.c:49:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ 1 warning generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Order.c -o Order.o Order.c:45:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ 1 warning generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c PairwiseAlignment.c -o PairwiseAlignment.o PairwiseAlignment.c:187:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ PairwiseAlignment.c:1033:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ 2 warnings generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c PredictDBN.c -o PredictDBN.o PredictDBN.c:159:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ 1 warning generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c PredictHEC.c -o PredictHEC.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c R_init_decipher.c -o R_init_decipher.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c S4Vectors_stubs.c -o S4Vectors_stubs.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Search.c -o Search.o Search.c:99:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ 1 warning generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c TerminalMismatch.c -o TerminalMismatch.o TerminalMismatch.c:40:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ 1 warning generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Translate.c -o Translate.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Utils.c -o Utils.o Utils.c:222:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ Utils.c:335:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ 2 warnings generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c VectorSums.c -o VectorSums.o VectorSums.c:82:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ 1 warning generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c XVector_stubs.c -o XVector_stubs.o clang -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o DECIPHER.so AlignProfiles.o AssignIndels.o Biostrings_stubs.o CalculateDeltaG.o CalculateFISH.o ChainSegments.o Cluster.o ClusterML.o ClusterMP.o Compositions.o Compression.o ConsensusSequence.o DesignProbes.o Diff.o DistanceMatrix.o EnumerateSequence.o ExpandAmbiguities.o FindFrameshifts.o GeneFinding.o GetPools.o Import.o InformationContent.o IntDist.o ManipulateXStringSet.o MeltPolymer.o MovingAverage.o NNLS.o Order.o PairwiseAlignment.o PredictDBN.o PredictHEC.o R_init_decipher.o S4Vectors_stubs.o Search.o TerminalMismatch.o Translate.o Utils.o VectorSums.o XVector_stubs.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/00LOCK-DECIPHER/00new/DECIPHER/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DECIPHER)
DECIPHER.Rcheck/DECIPHER-Ex.timings
name | user | system | elapsed | |
AA_REDUCED | 0.102 | 0.016 | 0.133 | |
Add2DB | 1.528 | 0.150 | 1.976 | |
AdjustAlignment | 0.464 | 0.021 | 0.545 | |
AlignDB | 2.562 | 0.057 | 2.954 | |
AlignPairs | 6.420 | 0.177 | 7.622 | |
AlignProfiles | 1.708 | 0.053 | 1.940 | |
AlignSeqs | 483.006 | 6.853 | 589.005 | |
AlignSynteny | 6.260 | 0.057 | 7.681 | |
AlignTranslation | 25.974 | 0.321 | 32.264 | |
AmplifyDNA | 0.004 | 0.005 | 0.011 | |
Array2Matrix | 9.392 | 0.072 | 16.566 | |
BLOSUM | 0.026 | 0.013 | 0.170 | |
BrowseDB | 0.081 | 0.008 | 0.127 | |
BrowseSeqs | 57.598 | 0.842 | 76.741 | |
CalculateEfficiencyArray | 0.028 | 0.008 | 0.042 | |
CalculateEfficiencyFISH | 0.009 | 0.001 | 0.011 | |
CalculateEfficiencyPCR | 0.010 | 0.001 | 0.014 | |
Clusterize | 10.875 | 0.524 | 14.246 | |
Codec | 1.320 | 0.029 | 1.810 | |
ConsensusSequence | 0.412 | 0.021 | 0.537 | |
Cophenetic | 0.368 | 0.009 | 0.436 | |
CorrectFrameshifts | 36.780 | 1.380 | 46.583 | |
CreateChimeras | 1.824 | 0.015 | 2.237 | |
DB2Seqs | 0.071 | 0.026 | 0.124 | |
DesignArray | 9.174 | 0.046 | 10.857 | |
DesignPrimers | 0.020 | 0.002 | 0.026 | |
DesignProbes | 0.018 | 0.002 | 0.023 | |
DesignSignatures | 0.019 | 0.004 | 0.028 | |
DetectRepeats | 67.776 | 0.467 | 77.662 | |
DigestDNA | 0.338 | 0.015 | 0.393 | |
Disambiguate | 0.131 | 0.006 | 0.152 | |
DistanceMatrix | 0.104 | 0.019 | 0.138 | |
ExtractGenes | 73.791 | 1.417 | 86.156 | |
FindChimeras | 0.158 | 0.007 | 0.185 | |
FindGenes | 74.344 | 1.431 | 83.600 | |
FindNonCoding | 84.938 | 5.386 | 101.951 | |
FindSynteny | 3.387 | 0.108 | 4.063 | |
FormGroups | 0.137 | 0.009 | 0.166 | |
Genes-class | 73.189 | 1.848 | 84.541 | |
HEC_MI | 0.391 | 0.020 | 0.466 | |
IdConsensus | 0.907 | 0.044 | 1.071 | |
IdLengths | 0.060 | 0.005 | 0.071 | |
IdTaxa | 15.561 | 0.444 | 18.045 | |
IdentifyByRank | 0.084 | 0.007 | 0.105 | |
IndexSeqs | 1.556 | 0.023 | 1.797 | |
InvertedIndex-class | 0.873 | 0.019 | 1.010 | |
LearnNonCoding | 170.153 | 5.403 | 199.182 | |
LearnTaxa | 9.979 | 2.209 | 14.313 | |
MIQS | 0.063 | 0.014 | 0.090 | |
MMLSUM | 0.013 | 0.016 | 0.030 | |
MODELS | 0.004 | 0.001 | 0.005 | |
MapCharacters | 142.796 | 1.105 | 157.558 | |
MaskAlignment | 1.053 | 0.050 | 1.189 | |
MeltDNA | 0.124 | 0.007 | 0.146 | |
NNLS | 0.005 | 0.002 | 0.008 | |
NonCoding-class | 0.103 | 0.026 | 0.139 | |
NonCodingRNA | 0.178 | 0.046 | 0.263 | |
OrientNucleotides | 0.817 | 0.015 | 0.901 | |
PAM | 0.012 | 0.008 | 0.024 | |
PFASUM | 0.015 | 0.007 | 0.024 | |
PredictDBN | 0.017 | 0.005 | 0.024 | |
PredictHEC | 0.489 | 0.018 | 0.549 | |
RESTRICTION_ENZYMES | 0.005 | 0.014 | 0.023 | |
ReadDendrogram | 0.042 | 0.004 | 0.050 | |
RemoveGaps | 0.029 | 0.002 | 0.034 | |
ScoreAlignment | 10.965 | 0.234 | 13.662 | |
SearchDB | 0.102 | 0.006 | 0.257 | |
SearchIndex | 1.791 | 0.238 | 3.238 | |
Seqs2DB | 0.209 | 0.007 | 0.527 | |
StaggerAlignment | 26.931 | 1.085 | 39.320 | |
Synteny-class | 4.498 | 0.061 | 6.026 | |
Taxa-class | 17.422 | 0.609 | 19.554 | |
TerminalChar | 0.014 | 0.002 | 0.016 | |
TileSeqs | 9.243 | 0.060 | 10.114 | |
TrainingSet_16S | 5.258 | 0.080 | 5.787 | |
TreeLine | 19.801 | 0.390 | 22.811 | |
TrimDNA | 0.278 | 0.014 | 0.328 | |
WriteDendrogram | 0.008 | 0.001 | 0.009 | |
WriteGenes | 73.566 | 1.941 | 84.593 | |
deltaGrules | 0.016 | 0.011 | 0.031 | |
deltaGrulesRNA | 0.033 | 0.011 | 0.048 | |
deltaHrules | 0.028 | 0.011 | 0.042 | |
deltaHrulesRNA | 0.028 | 0.011 | 0.041 | |
deltaSrules | 0.103 | 0.011 | 0.122 | |
deltaSrulesRNA | 0.025 | 0.013 | 0.040 | |