Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-08-21 11:40 -0400 (Wed, 21 Aug 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4703 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4440 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4472 |
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4421 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4414 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 272/2255 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
CardinalIO 1.3.3 (landing page) Kylie Ariel Bemis
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ![]() | ||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK | ![]() | ||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the CardinalIO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CardinalIO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: CardinalIO |
Version: 1.3.3 |
Command: rm -rf CardinalIO.buildbin-libdir && mkdir CardinalIO.buildbin-libdir && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL --build --library=CardinalIO.buildbin-libdir CardinalIO_1.3.3.tar.gz |
StartedAt: 2024-08-21 06:56:22 -0400 (Wed, 21 Aug 2024) |
EndedAt: 2024-08-21 06:57:01 -0400 (Wed, 21 Aug 2024) |
EllapsedTime: 38.9 seconds |
RetCode: 0 |
Status: OK |
PackageFile: CardinalIO_1.3.3.zip |
PackageFileSize: 1.273 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf CardinalIO.buildbin-libdir && mkdir CardinalIO.buildbin-libdir && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL --build --library=CardinalIO.buildbin-libdir CardinalIO_1.3.3.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'CardinalIO' ... ** using staged installation ** libs using C++ compiler: 'G__~1.EXE (GCC) 13.2.0' g++ -std=gnu++17 -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c CardinalIO.cpp -o CardinalIO.o In file included from CardinalIO.h:5, from CardinalIO.cpp:2: imzML.h: In member function 'int imzML::get_params(pugi::xml_node, int, SEXP, SEXP)': imzML.h:346:43: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare] 346 | while ( node && i < count ) { | ~~^~~~~~~ imzML.h:367:32: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare] 367 | if ( i != count ) | ~~^~~~~~~~ g++ -std=gnu++17 -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c init.cpp -o init.o In file included from CardinalIO.h:5, from init.cpp:3: imzML.h: In member function 'int imzML::get_params(pugi::xml_node, int, SEXP, SEXP)': imzML.h:346:43: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare] 346 | while ( node && i < count ) { | ~~^~~~~~~ imzML.h:367:32: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare] 367 | if ( i != count ) | ~~^~~~~~~~ g++ -std=gnu++17 -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c pugixml.cpp -o pugixml.o pugixml.cpp:2303:23: warning: 'void pugi::impl::{anonymous}::as_utf8_end(char*, size_t, const wchar_t*, size_t)' defined but not used [-Wunused-function] 2303 | PUGI__FN void as_utf8_end(char* buffer, size_t size, const wchar_t* str, size_t length) | ^~~~~~~~~~~ pugixml.cpp:2297:25: warning: 'size_t pugi::impl::{anonymous}::as_utf8_begin(const wchar_t*, size_t)' defined but not used [-Wunused-function] 2297 | PUGI__FN size_t as_utf8_begin(const wchar_t* str, size_t length) | ^~~~~~~~~~~~~ pugixml.cpp:248:25: warning: 'size_t pugi::impl::{anonymous}::strlength_wide(const wchar_t*)' defined but not used [-Wunused-function] 248 | PUGI__FN size_t strlength_wide(const wchar_t* s) | ^~~~~~~~~~~~~~ g++ -std=gnu++17 -shared -s -static-libgcc -o CardinalIO.dll tmp.def CardinalIO.o init.o pugixml.o -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.20-bioc/R/bin/x64 -lR installing to F:/biocbuild/bbs-3.20-bioc/meat/CardinalIO.buildbin-libdir/00LOCK-CardinalIO/00new/CardinalIO/libs/x64 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'CardinalIO' as CardinalIO_1.3.3.zip * DONE (CardinalIO)