Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-08-17 11:40 -0400 (Sat, 17 Aug 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4703 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4440 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4472 |
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4420 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4413 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 389/2255 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
CNORode 1.47.0 (landing page) Attila Gabor
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | WARNINGS | ![]() | ||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | ![]() | ||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | ![]() | ||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | WARNINGS | OK | ![]() | ||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | WARNINGS | ||||||||||
To the developers/maintainers of the CNORode package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CNORode.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: CNORode |
Version: 1.47.0 |
Command: rm -rf CNORode.buildbin-libdir && mkdir CNORode.buildbin-libdir && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL --build --library=CNORode.buildbin-libdir CNORode_1.47.0.tar.gz |
StartedAt: 2024-08-17 06:58:23 -0400 (Sat, 17 Aug 2024) |
EndedAt: 2024-08-17 06:59:02 -0400 (Sat, 17 Aug 2024) |
EllapsedTime: 39.1 seconds |
RetCode: 0 |
Status: OK |
PackageFile: CNORode_1.47.0.zip |
PackageFileSize: 304 KiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf CNORode.buildbin-libdir && mkdir CNORode.buildbin-libdir && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL --build --library=CNORode.buildbin-libdir CNORode_1.47.0.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'CNORode' ... ** using staged installation ** libs using C compiler: 'gcc.exe (GCC) 13.2.0' gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -I./include -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c FG_transfer_function.c -o FG_transfer_function.o gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -I./include -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cvodea.c -o cvodea.o cvodea.c: In function 'CVAhermiteStorePnt': cvodea.c:2445:11: warning: variable 'retval' set but not used [-Wunused-but-set-variable] 2445 | int is, retval; | ^~~~~~ cvodea.c: In function 'CVArhsQ': cvodea.c:2941:7: warning: variable 'flag' set but not used [-Wunused-but-set-variable] 2941 | int flag, retval; | ^~~~ cvodea.c: In function 'CVAhermiteGetY': cvodea.c:2569:7: warning: 'yS0' may be used uninitialized [-Wmaybe-uninitialized] 2569 | N_VLinearSum(ONE, yS1[is], -ONE, yS0[is], YS[0][is]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cvodea.c:2507:13: note: 'yS0' was declared here 2507 | N_Vector *yS0, *ySd0, *yS1, *ySd1; | ^~~ cvodea.c:2570:7: warning: 'ySd0' may be used uninitialized [-Wmaybe-uninitialized] 2570 | N_VLinearSum(ONE, ySd1[is], ONE, ySd0[is], YS[1][is]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cvodea.c:2507:19: note: 'ySd0' was declared here 2507 | N_Vector *yS0, *ySd0, *yS1, *ySd1; | ^~~~ gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -I./include -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cvodea_io.c -o cvodea_io.o gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -I./include -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cvodes.c -o cvodes.o cvodes.c: In function 'cvHin': cvodes.c:4318:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 4318 | if (count1 <= 2) | ^~ cvodes.c:4320:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 4320 | if (retval == QRHSFUNC_RECVR) return(CV_REPTD_QRHSFUNC_ERR); | ^~ cvodes.c: In function 'cvQuadSensRhs1InternalDQ': cvodes.c:8834:20: warning: variable 'rDeltap' set but not used [-Wunused-but-set-variable] 8834 | realtype Deltap, rDeltap; | ^~~~~~~ gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -I./include -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cvodes_band.c -o cvodes_band.o gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -I./include -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cvodes_bandpre.c -o cvodes_bandpre.o gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -I./include -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cvodes_bbdpre.c -o cvodes_bbdpre.o gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -I./include -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cvodes_dense.c -o cvodes_dense.o gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -I./include -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cvodes_diag.c -o cvodes_diag.o gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -I./include -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cvodes_direct.c -o cvodes_direct.o gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -I./include -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cvodes_io.c -o cvodes_io.o gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -I./include -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cvodes_spbcgs.c -o cvodes_spbcgs.o gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -I./include -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cvodes_spgmr.c -o cvodes_spgmr.o gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -I./include -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cvodes_spils.c -o cvodes_spils.o gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -I./include -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cvodes_sptfqmr.c -o cvodes_sptfqmr.o gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -I./include -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c decimal2binary.c -o decimal2binary.o gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -I./include -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c findStates.c -o findStates.o gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -I./include -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c fnvector_serial.c -o fnvector_serial.o gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -I./include -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c getAdjacencyMatrix.c -o getAdjacencyMatrix.o gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -I./include -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c getNumBits.c -o getNumBits.o gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -I./include -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c getNumInputs.c -o getNumInputs.o gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -I./include -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c getStateIndex.c -o getStateIndex.o gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -I./include -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c getTruthTables.c -o getTruthTables.o gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -I./include -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c get_count_bits.c -o get_count_bits.o gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -I./include -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c get_input_index.c -o get_input_index.o gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -I./include -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c get_support_truth_tables.c -o get_support_truth_tables.o gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -I./include -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c get_truth_tables_index.c -o get_truth_tables_index.o gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -I./include -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c hill_function.c -o hill_function.o gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -I./include -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c linear_transfer_function.c -o linear_transfer_function.o gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -I./include -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c normHill.c -o normHill.o gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -I./include -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c normHill_mod.c -o normHill_mod.o gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -I./include -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c nvector_serial.c -o nvector_serial.o gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -I./include -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c printAdjMat.c -o printAdjMat.o gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -I./include -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c printInterMat.c -o printInterMat.o gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -I./include -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c printNminiTerms.c -o printNminiTerms.o gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -I./include -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c printTruthTables.c -o printTruthTables.o gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -I./include -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rhsODE.c -o rhsODE.o gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -I./include -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c sim_logic_ode.c -o sim_logic_ode.o gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -I./include -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c simulateODE.c -o simulateODE.o simulateODE.c: In function 'simulateODE': simulateODE.c:37:21: warning: variable 'counter' set but not used [-Wunused-but-set-variable] 37 | int i,j,neq,counter,flag; | ^~~~~~~ simulateODE.c:250:5: warning: 'tout' may be used uninitialized [-Wmaybe-uninitialized] 250 | rhsODEF(tout,yf,ydotf, data); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ simulateODE.c:38:18: note: 'tout' was declared here 38 | realtype tout, ti, tf; | ^~~~ gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -I./include -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c sundials_band.c -o sundials_band.o gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -I./include -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c sundials_dense.c -o sundials_dense.o gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -I./include -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c sundials_direct.c -o sundials_direct.o gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -I./include -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c sundials_iterative.c -o sundials_iterative.o gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -I./include -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c sundials_math.c -o sundials_math.o gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -I./include -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c sundials_nvector.c -o sundials_nvector.o gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -I./include -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c sundials_spbcgs.c -o sundials_spbcgs.o gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -I./include -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c sundials_spgmr.c -o sundials_spgmr.o sundials_spgmr.c: In function 'SpgmrFree': sundials_spgmr.c:439:29: warning: variable 'yg' set but not used [-Wunused-but-set-variable] 439 | realtype **Hes, *givens, *yg; | ^~ sundials_spgmr.c:439:20: warning: variable 'givens' set but not used [-Wunused-but-set-variable] 439 | realtype **Hes, *givens, *yg; | ^~~~~~ gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -I./include -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c sundials_sptfqmr.c -o sundials_sptfqmr.o gcc -shared -s -static-libgcc -o CNORode.dll tmp.def FG_transfer_function.o cvodea.o cvodea_io.o cvodes.o cvodes_band.o cvodes_bandpre.o cvodes_bbdpre.o cvodes_dense.o cvodes_diag.o cvodes_direct.o cvodes_io.o cvodes_spbcgs.o cvodes_spgmr.o cvodes_spils.o cvodes_sptfqmr.o decimal2binary.o findStates.o fnvector_serial.o getAdjacencyMatrix.o getNumBits.o getNumInputs.o getStateIndex.o getTruthTables.o get_count_bits.o get_input_index.o get_support_truth_tables.o get_truth_tables_index.o hill_function.o linear_transfer_function.o normHill.o normHill_mod.o nvector_serial.o printAdjMat.o printInterMat.o printNminiTerms.o printTruthTables.o rhsODE.o sim_logic_ode.o simulateODE.o sundials_band.o sundials_dense.o sundials_direct.o sundials_iterative.o sundials_math.o sundials_nvector.o sundials_spbcgs.o sundials_spgmr.o sundials_sptfqmr.o -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.20-bioc/R/bin/x64 -lR installing to F:/biocbuild/bbs-3.20-bioc/meat/CNORode.buildbin-libdir/00LOCK-CNORode/00new/CNORode/libs/x64 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'CNORode' as CNORode_1.47.0.zip * DONE (CNORode)