Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-07-18 11:39 -0400 (Thu, 18 Jul 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4683 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4379 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4450 |
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4399 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 218/2248 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Biostrings 2.73.1 (landing page) Hervé Pagès
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | WARNINGS | ![]() | ||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | ERROR | OK | ERROR | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | ![]() | ||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | WARNINGS | OK | ![]() | ||||||||
To the developers/maintainers of the Biostrings package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Biostrings.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: Biostrings |
Version: 2.73.1 |
Command: F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:Biostrings.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings Biostrings_2.73.1.tar.gz |
StartedAt: 2024-07-17 23:14:26 -0400 (Wed, 17 Jul 2024) |
EndedAt: 2024-07-17 23:14:45 -0400 (Wed, 17 Jul 2024) |
EllapsedTime: 19.4 seconds |
RetCode: 1 |
Status: ERROR |
CheckDir: Biostrings.Rcheck |
Warnings: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:Biostrings.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings Biostrings_2.73.1.tar.gz ### ############################################################################## ############################################################################## * using log directory 'F:/biocbuild/bbs-3.20-bioc/meat/Biostrings.Rcheck' * using R version 4.4.1 (2024-06-14 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * using option '--no-vignettes' * checking for file 'Biostrings/DESCRIPTION' ... OK * this is package 'Biostrings' version '2.73.1' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'Biostrings' can be installed ... ERROR Installation failed. See 'F:/biocbuild/bbs-3.20-bioc/meat/Biostrings.Rcheck/00install.out' for details. * DONE Status: 1 ERROR See 'F:/biocbuild/bbs-3.20-bioc/meat/Biostrings.Rcheck/00check.log' for details.
Biostrings.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL Biostrings ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.20-bioc/R/library' * installing *source* package 'Biostrings' ... ERROR: cannot remove earlier installation, is it in use? * removing 'F:/biocbuild/bbs-3.20-bioc/R/library/Biostrings' * restoring previous 'F:/biocbuild/bbs-3.20-bioc/R/library/Biostrings' Warning in file.copy(lp, dirname(pkgdir), recursive = TRUE, copy.date = TRUE) : problem copying F:\biocbuild\bbs-3.20-bioc\R\library\00LOCK-Biostrings\Biostrings\libs\x64\Biostrings.dll to F:\biocbuild\bbs-3.20-bioc\R\library\Biostrings\libs\x64\Biostrings.dll: Permission denied