Back to Multiple platform build/check report for BioC 3.20:   simplified   long
A[B]CDEFGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2024-11-01 12:02 -0400 (Fri, 01 Nov 2024).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.1 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4503
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4763
palomino8Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4506
lconwaymacOS 12.7.1 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4538
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.4.1 (2024-06-14) -- "Race for Your Life" 4493
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 188/2289HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BiocOncoTK 1.26.0  (landing page)
VJ Carey
Snapshot Date: 2024-10-31 13:40 -0400 (Thu, 31 Oct 2024)
git_url: https://git.bioconductor.org/packages/BiocOncoTK
git_branch: RELEASE_3_20
git_last_commit: 18d96dc
git_last_commit_date: 2024-10-29 10:28:15 -0400 (Tue, 29 Oct 2024)
teran2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped
palomino8Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    ERROR  skipped

BUILD results for BiocOncoTK on teran2

To the developers/maintainers of the BiocOncoTK package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BiocOncoTK.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: BiocOncoTK
Version: 1.26.0
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data BiocOncoTK
StartedAt: 2024-10-31 16:42:04 -0400 (Thu, 31 Oct 2024)
EndedAt: 2024-10-31 16:43:15 -0400 (Thu, 31 Oct 2024)
EllapsedTime: 70.6 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data BiocOncoTK
###
##############################################################################
##############################################################################


* checking for file ‘BiocOncoTK/DESCRIPTION’ ... OK
* preparing ‘BiocOncoTK’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘BiocOncoTK.Rmd’ using rmarkdown

Quitting from lines 18-31 [setup] (BiocOncoTK.Rmd)
Error: processing vignette 'BiocOncoTK.Rmd' failed with diagnostics:
there is no package called 'restfulSE'
--- failed re-building ‘BiocOncoTK.Rmd’

--- re-building ‘curatedMSIData.Rmd’ using rmarkdown
--- finished re-building ‘curatedMSIData.Rmd’

--- re-building ‘maptcga.Rmd’ using rmarkdown
--- finished re-building ‘maptcga.Rmd’

SUMMARY: processing the following file failed:
  ‘BiocOncoTK.Rmd’

Error: Vignette re-building failed.
Execution halted